Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2576

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2575: 10943 - KOG1022 Acetylglucosaminyltransferase EXT2/exostosin 2, at 479011 to 480812 10943 mRNA_2576: 10944 - Hypothetical Protein, at 480885 to 482213 10944 mRNA_2577: 10945 - HMMPfam-Protein of unknown function (DUF3767)-PF12597, at 482367 to 483175 10945

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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479,981 - 10943 mRNA_2575 0.54 1.7
480,011 + 10943 mRNA_2575 0.55 1.3
480,273 - 10943 mRNA_2575 0.70 -0.1
480,276 + 10943 mRNA_2575 0.70 0.6
480,418 - 10943 mRNA_2575 0.78 1.1
480,431 - 10943 mRNA_2575 0.79 0.9
480,441 + 10943 mRNA_2575 0.79 -1.6
480,529 - 10943 mRNA_2575 0.84 -0.4
480,584 - 10943 mRNA_2575 0.87 -0.3
480,659 - -0.9
480,739 - 0.3
480,746 + 2.2
480,749 - -0.5
480,754 - 1.1
480,761 + 0.9
480,811 - 0.6
480,860 + -0.3
480,874 - -1.1
480,879 + 1.3
480,884 + -0.2
480,982 - -0.3
481,038 + 10944 mRNA_2576 0.12 0.5
481,041 + 10944 mRNA_2576 0.12 0.1
481,051 + 10944 mRNA_2576 0.12 0.4
481,131 - 10944 mRNA_2576 0.19 0.6
481,160 + 10944 mRNA_2576 0.21 0.6
481,215 + 10944 mRNA_2576 0.25 -1.5
481,234 - 10944 mRNA_2576 0.26 1.9
481,243 - 10944 mRNA_2576 0.27 -0.4
481,291 + 10944 mRNA_2576 0.31 2.4
481,298 - 10944 mRNA_2576 0.31 -0.2
481,336 + 10944 mRNA_2576 0.34 -0.5
481,527 - 10944 mRNA_2576 0.48 1.5
481,967 + 10944 mRNA_2576 0.81 -0.7
482,058 - 10944 mRNA_2576 0.88 0.2
482,072 + 10944 mRNA_2576 0.89 1.4
482,330 + -0.4
482,369 + 0.8
482,372 - -1.4
482,479 - 10945 mRNA_2577 0.14 -1.6