Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2563

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2562: 10930 - Hypothetical Protein, at 452219 to 453821 10930 mRNA_2563: 10931 - Interpro F-box-like, at 454095 to 455181 10931 mRNA_2564: 10932 - SUPERFAMILY--SSF52058, at 455625 to 456615 10932

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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453,102 - 10930 mRNA_2562 0.55 2.3
453,267 - 10930 mRNA_2562 0.65 0.2
453,277 + 10930 mRNA_2562 0.66 -0.9
453,284 - 10930 mRNA_2562 0.66 0.5
453,453 - 10930 mRNA_2562 0.77 0.5
453,456 + 10930 mRNA_2562 0.77 -0.3
453,579 + 10930 mRNA_2562 0.85 -0.1
453,724 + 0.0
453,745 + -0.2
453,886 - 0.2
454,141 + 0.3
454,170 + 1.2
454,174 + 0.8
454,287 + 10931 mRNA_2563 0.18 -1.5
454,432 - 10931 mRNA_2563 0.31 -0.4
454,477 - 10931 mRNA_2563 0.35 -0.5
454,585 + 10931 mRNA_2563 0.45 0.4
454,635 - 10931 mRNA_2563 0.50 -1.4
455,084 + 0.4
455,318 - 0.7
455,493 - -2.1
455,518 + -0.5
455,622 - -0.3
455,780 + 10932 mRNA_2564 0.16 -0.8
456,085 - 10932 mRNA_2564 0.46 -1.2