Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2539

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2538: 10906 - SUPERFAMILY--SSF56112, at 393822 to 395821 10906 mRNA_2539: 10907 - Hypothetical Protein, at 396094 to 398437 10907 mRNA_2540: 10908 - SUPERFAMILY--SSF52058, at 398635 to 399613 10908

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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395,138 - 10906 mRNA_2538 0.66 1.1
395,441 + 10906 mRNA_2538 0.81 1.0
395,554 - 10906 mRNA_2538 0.87 0.7
395,578 + 10906 mRNA_2538 0.88 -0.1
395,600 + 10906 mRNA_2538 0.89 1.4
395,608 + 10906 mRNA_2538 0.89 -0.4
395,610 - 10906 mRNA_2538 0.89 -0.8
395,747 + -2.6
395,794 + -1.2
395,926 + -0.1
396,024 + -1.2
396,048 - 0.7
396,172 + -1.5
396,180 - 0.5
396,196 - -1.1
396,196 - -1.0
396,208 + 0.1
396,367 + 10907 mRNA_2539 0.12 0.1
396,464 + 10907 mRNA_2539 0.16 -0.3
396,528 + 10907 mRNA_2539 0.19 -2.6
396,871 + 10907 mRNA_2539 0.33 -0.5
396,917 - 10907 mRNA_2539 0.35 0.1
396,951 - 10907 mRNA_2539 0.37 -0.2
397,022 + 10907 mRNA_2539 0.40 -2.3
397,658 + 10907 mRNA_2539 0.67 -0.3
397,921 + 10907 mRNA_2539 0.78 -0.9
397,927 + 10907 mRNA_2539 0.78 -1.2
398,070 + 10907 mRNA_2539 0.84 -1.7
398,075 - 10907 mRNA_2539 0.85 -0.0
398,288 + -0.8
398,364 + -1.4
398,406 - -0.3
398,515 + -1.3
398,515 + -0.3
398,618 + 1.5
398,635 - -1.4
398,792 + 10908 mRNA_2540 0.16 -0.6
398,798 - 10908 mRNA_2540 0.17 0.5
398,846 - 10908 mRNA_2540 0.22 -2.1
398,867 - 10908 mRNA_2540 0.24 0.8
398,908 - 10908 mRNA_2540 0.28 1.6
398,949 - 10908 mRNA_2540 0.32 -0.4
399,077 - 10908 mRNA_2540 0.45 -1.7
399,265 - 10908 mRNA_2540 0.64 -1.1
399,380 - 10908 mRNA_2540 0.76 0.4
399,434 + 10908 mRNA_2540 0.82 0.7