Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2538

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2537: 10905 - BLAST Alba domain-containing protein [Rhizoctonia solani AG..., at 392613 to 393652 10905 mRNA_2538: 10906 - SUPERFAMILY--SSF56112, at 393822 to 395821 10906 mRNA_2539: 10907 - Hypothetical Protein, at 396094 to 398437 10907

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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393,569 + -1.6
393,869 + 0.0
394,613 - 10906 mRNA_2538 0.40 -1.6
394,716 - 10906 mRNA_2538 0.45 1.4
394,864 + 10906 mRNA_2538 0.52 0.5
394,869 + 10906 mRNA_2538 0.52 0.6
395,138 - 10906 mRNA_2538 0.66 1.1
395,441 + 10906 mRNA_2538 0.81 1.0
395,554 - 10906 mRNA_2538 0.87 0.7
395,578 + 10906 mRNA_2538 0.88 -0.1
395,600 + 10906 mRNA_2538 0.89 1.4
395,608 + 10906 mRNA_2538 0.89 -0.4
395,610 - 10906 mRNA_2538 0.89 -0.8
395,747 + -2.6
395,794 + -1.2
395,926 + -0.1
396,024 + -1.2
396,048 - 0.7
396,172 + -1.5
396,180 - 0.5
396,196 - -1.1
396,196 - -1.0
396,208 + 0.1
396,367 + 10907 mRNA_2539 0.12 0.1
396,464 + 10907 mRNA_2539 0.16 -0.3
396,528 + 10907 mRNA_2539 0.19 -2.6