Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2525

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2525: 10893 - KOG0590 Checkpoint kinase and related serine/threonine protein kinases, at 354865 to 358254 10893 mRNA_2526: 10894 - HMMPfam-Protein of unknown function (DUF1212)-PF06738,HMMPfam-Protein of unknown function (DUF3815)-PF12821, at 358856 to 360952 10894

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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353,869 - 1.2
354,353 - 0.2
354,577 - 0.1
354,754 + -1.3
354,763 + 0.2
354,780 + -1.4
354,931 + -0.1
355,232 + 10893 mRNA_2525 0.11 0.3
355,421 - 10893 mRNA_2525 0.16 -1.3
355,931 - 10893 mRNA_2525 0.31 -1.2
355,932 + 10893 mRNA_2525 0.31 0.9
355,963 + 10893 mRNA_2525 0.32 0.1
356,058 - 10893 mRNA_2525 0.35 -2.3
356,223 - 10893 mRNA_2525 0.40 1.8
356,225 - 10893 mRNA_2525 0.40 -0.1
356,431 - 10893 mRNA_2525 0.46 1.5
356,528 + 10893 mRNA_2525 0.49 0.7
356,534 - 10893 mRNA_2525 0.49 1.8
356,561 + 10893 mRNA_2525 0.50 -0.9
356,836 - 10893 mRNA_2525 0.58 0.7
357,002 - 10893 mRNA_2525 0.63 -0.1
357,034 - 10893 mRNA_2525 0.64 -0.8
357,046 - 10893 mRNA_2525 0.64 0.6
357,263 - 10893 mRNA_2525 0.71 1.3
357,272 + 10893 mRNA_2525 0.71 1.1
357,678 - 10893 mRNA_2525 0.83 1.6
357,737 + 10893 mRNA_2525 0.85 0.4
357,852 - 10893 mRNA_2525 0.88 -2.2
358,009 - -1.1
358,013 - 0.7
358,021 - -0.7
358,046 + 0.3
358,144 - -1.3
358,213 + 0.6
358,307 - -0.2
358,336 + -1.6
358,384 + 0.7
358,387 - -0.3
358,447 + 0.3
358,462 - 0.3
358,530 - -0.3
358,577 + -1.1
358,593 + -0.3
358,599 - -0.1
358,613 - -0.8
358,653 - -1.2
358,680 + 1.9
358,692 - 0.0
358,766 - -1.5
358,994 + -1.4
359,140 - 10894 mRNA_2526 0.14 1.4
359,216 + 10894 mRNA_2526 0.17 0.8