Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2520

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2519: 10887 - SMART-Parallel beta-helix repeats-SM00710,SUPERFAMILY--SSF51126, at 342708 to 344522 10887 mRNA_2520: 10888 - KOG1441 Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter, at 345046 to 346549 10888 mRNA_2521: 10889 - BLAST beta-glucosidase 1 precursor [Aspergillus rambellii], at 346896 to 348680 10889

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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344,049 - 10887 mRNA_2519 0.74 -0.3
344,212 + 10887 mRNA_2519 0.83 1.1
344,385 + -0.2
344,387 - 0.4
344,664 - -0.4
344,680 - -0.1
344,688 + 0.5
344,774 - 2.6
344,814 + 2.0
344,831 - 0.6
344,968 + 0.6
345,099 - 1.6
345,142 - -0.7
345,355 - 10888 mRNA_2520 0.21 1.7
345,406 - 10888 mRNA_2520 0.24 0.4
345,420 + 10888 mRNA_2520 0.25 2.2
345,546 - 10888 mRNA_2520 0.33 2.6
345,567 + 10888 mRNA_2520 0.35 -0.5
345,667 - 10888 mRNA_2520 0.41 0.8
345,703 + 10888 mRNA_2520 0.44 1.2
346,236 + 10888 mRNA_2520 0.79 1.4
346,239 - 10888 mRNA_2520 0.79 -1.2
346,712 + 0.8