Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2519

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2519: 10887 - SMART-Parallel beta-helix repeats-SM00710,SUPERFAMILY--SSF51126, at 342708 to 344522 10887 mRNA_2520: 10888 - KOG1441 Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter, at 345046 to 346549 10888

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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341,992 + 2.1
342,006 + -0.2
342,029 - 0.6
342,076 - -0.8
342,085 - 0.2
342,087 - 1.8
342,094 + 0.2
342,147 + -0.3
342,165 - -0.2
342,167 + -1.4
342,168 + -0.8
342,179 - 1.3
342,191 - 1.3
342,198 + -0.0
342,214 - -0.2
342,217 - -1.3
342,293 - 1.0
342,298 - 0.5
342,298 - -0.4
342,302 + 1.7
342,302 - 0.5
342,302 + 1.3
342,337 + 0.5
342,341 + 0.9
342,341 + -0.0
342,344 + 0.1
342,355 + -1.7
342,430 + 0.7
342,603 + -1.7
342,707 + 0.4
342,882 - -2.3
343,002 - 10887 mRNA_2519 0.16 2.6
343,184 - 10887 mRNA_2519 0.26 0.3
343,331 + 10887 mRNA_2519 0.34 -0.2
343,340 - 10887 mRNA_2519 0.35 -0.2
343,434 + 10887 mRNA_2519 0.40 -0.1
343,758 - 10887 mRNA_2519 0.58 0.7
344,049 - 10887 mRNA_2519 0.74 -0.3
344,212 + 10887 mRNA_2519 0.83 1.1
344,385 + -0.2
344,387 - 0.4
344,664 - -0.4
344,680 - -0.1
344,688 + 0.5
344,774 - 2.6
344,814 + 2.0
344,831 - 0.6
344,968 + 0.6
345,099 - 1.6
345,142 - -0.7
345,355 - 10888 mRNA_2520 0.21 1.7
345,406 - 10888 mRNA_2520 0.24 0.4
345,420 + 10888 mRNA_2520 0.25 2.2