Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2505

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2504: 10872 - BLAST Immunoglobulin-like domain contaning protein [Rho..., at 309895 to 311581 10872 mRNA_2505: 10873 - KOG3299 Uncharacterized conserved protein, at 311631 to 312608 10873 mRNA_2506: 10874 - HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839, at 312607 to 314311 10874

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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310,631 + 10872 mRNA_2504 0.44 0.1
310,754 - 10872 mRNA_2504 0.51 0.5
310,872 - 10872 mRNA_2504 0.58 -0.1
310,919 - 10872 mRNA_2504 0.61 0.7
311,187 + 10872 mRNA_2504 0.77 0.7
311,188 + 10872 mRNA_2504 0.77 -0.5
311,529 + -0.7
311,620 - 0.8
311,769 + 10873 mRNA_2505 0.14 0.4
312,350 - 10873 mRNA_2505 0.74 0.3
312,469 + 10873 mRNA_2505 0.86 3.1
312,584 - 0.8
312,605 - 2.2
312,607 + 0.0
312,636 + 0.0
312,640 - 0.3
312,778 + 10874 mRNA_2506 0.10 -0.2
312,784 + 10874 mRNA_2506 0.10 -0.3
312,784 - 10874 mRNA_2506 0.10 0.1
312,791 + 10874 mRNA_2506 0.11 -0.5
313,047 - 10874 mRNA_2506 0.26 -1.5
313,071 - 10874 mRNA_2506 0.27 0.2
313,083 - 10874 mRNA_2506 0.28 -0.4
313,245 - 10874 mRNA_2506 0.37 0.3
313,333 - 10874 mRNA_2506 0.43 0.3
313,363 - 10874 mRNA_2506 0.44 1.3
313,381 + 10874 mRNA_2506 0.45 -1.1
313,388 + 10874 mRNA_2506 0.46 -0.2
313,409 + 10874 mRNA_2506 0.47 0.1
313,525 + 10874 mRNA_2506 0.54 -1.2
313,526 - 10874 mRNA_2506 0.54 0.8