Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2497

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2496: 10864 - KOG0254 Predicted transporter (major facilitator superfamily), at 288113 to 290739 10864 mRNA_2497: 10865 - KOG0379 Kelch repeat-containing proteins, at 291079 to 294153 10865

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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290,112 - 10864 mRNA_2496 0.76 -0.3
290,113 + 10864 mRNA_2496 0.76 -0.3
290,155 + 10864 mRNA_2496 0.78 -0.7
290,193 + 10864 mRNA_2496 0.79 -1.1
290,196 - 10864 mRNA_2496 0.79 0.1
290,263 - 10864 mRNA_2496 0.82 0.7
290,345 + 10864 mRNA_2496 0.85 -2.4
290,392 - 10864 mRNA_2496 0.87 0.6
290,455 + 10864 mRNA_2496 0.89 -1.9
290,495 - 0.6
290,536 - -2.1
290,539 - -1.0
290,554 + 1.4
290,559 + -0.5
290,562 + -0.3
290,562 + 0.3
290,593 + 1.6
290,612 + 0.4
290,634 + 1.0
290,702 + 0.4
290,724 + -0.2
290,751 - -0.3
290,827 - 0.2
290,957 + -0.9
290,994 + 0.7
291,053 - -1.5
291,085 + -0.6
291,127 - 0.4
291,472 - 10865 mRNA_2497 0.13 0.4
291,495 + 10865 mRNA_2497 0.14 0.4
291,764 - 10865 mRNA_2497 0.22 0.1
291,878 + 10865 mRNA_2497 0.26 -0.5
291,891 - 10865 mRNA_2497 0.26 0.3
292,231 + 10865 mRNA_2497 0.37 1.0
292,528 - 10865 mRNA_2497 0.47 0.2
292,601 + 10865 mRNA_2497 0.49 0.3
292,683 + 10865 mRNA_2497 0.52 1.0
292,950 + 10865 mRNA_2497 0.61 0.9
293,400 + 10865 mRNA_2497 0.75 -1.4
293,728 + 10865 mRNA_2497 0.86 0.3
293,943 + 0.3
293,966 - 0.4
293,976 + 0.1
293,998 - 0.3
294,134 + -0.4
294,299 - -1.1
294,326 - -0.3
294,438 - -0.8
294,450 - 0.2
294,543 - -1.4
294,578 - 1.2
294,580 - -0.4
294,717 + -0.1
294,729 - -0.1
294,731 + 1.1
294,738 - 0.8
294,773 - -1.6
294,855 - -2.1
294,863 - 0.0
294,869 + -0.3
294,875 + -1.3
294,875 - -0.2
294,879 + -0.2
294,888 + -0.4
294,915 + -0.7
294,918 - 0.3
294,991 - -0.3
294,996 - -0.9
295,011 + -1.2
295,015 + 0.1
295,025 - -1.0
295,028 + -0.2
295,036 + 1.1
295,037 + 0.3
295,039 - -0.7
295,041 - 1.0
295,042 + 0.1
295,044 - -1.2
295,045 + -0.0
295,045 - 0.3
295,048 + -0.1
295,048 - 1.1
295,050 + -0.5
295,054 + 0.0
295,069 + -0.1
295,083 + -0.6
295,099 + -1.4
295,101 - -0.4