Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2473

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2472: 10840 - K07836 RAP1B Ras-related protein Rap-1B, at 228685 to 229666 10840 mRNA_2473: 10841 - K01610 E4.1.1.49, pckA phosphoenolpyruvate carboxykinase (ATP), at 230136 to 233558 10841 mRNA_2474: 10842 - KOG0603 Ribosomal protein S6 kinase, at 234258 to 235956 10842

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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229,652 - 0.6
229,657 + -0.7
229,804 + -0.3
230,109 + -0.3
230,544 + 10841 mRNA_2473 0.12 -1.7
231,249 + 10841 mRNA_2473 0.33 -3.4
231,260 - 10841 mRNA_2473 0.33 -2.7
231,261 + 10841 mRNA_2473 0.33 -0.7
231,421 + 10841 mRNA_2473 0.38 -2.8
231,527 - 10841 mRNA_2473 0.41 -1.1
231,546 + 10841 mRNA_2473 0.41 -3.0
231,688 - 10841 mRNA_2473 0.45 -3.1
232,271 - 10841 mRNA_2473 0.62 -3.3
232,275 + 10841 mRNA_2473 0.62 -2.6
232,424 + 10841 mRNA_2473 0.67 -2.2
232,426 + 10841 mRNA_2473 0.67 -1.1
232,585 + 10841 mRNA_2473 0.72 -3.2
232,718 - 10841 mRNA_2473 0.75 -3.3
232,871 - 10841 mRNA_2473 0.80 -2.4
233,026 - 10841 mRNA_2473 0.84 -0.7
233,026 - 10841 mRNA_2473 0.84 -2.2
233,030 + 10841 mRNA_2473 0.85 1.5
233,044 - 10841 mRNA_2473 0.85 1.4
233,049 - 10841 mRNA_2473 0.85 -1.3
233,050 - 10841 mRNA_2473 0.85 0.9
233,053 + 10841 mRNA_2473 0.85 0.9
233,056 + 10841 mRNA_2473 0.85 -0.1
233,058 + 10841 mRNA_2473 0.85 -0.3
233,058 + 10841 mRNA_2473 0.85 1.1
233,061 + 10841 mRNA_2473 0.85 -0.2
233,062 + 10841 mRNA_2473 0.85 -0.4
233,067 + 10841 mRNA_2473 0.86 -0.1
233,089 - 10841 mRNA_2473 0.86 -0.1
233,199 - 10841 mRNA_2473 0.89 -0.2
233,206 - 10841 mRNA_2473 0.90 0.6
233,209 - 10841 mRNA_2473 0.90 -0.6
233,213 + 10841 mRNA_2473 0.90 -0.1
233,224 + -1.0
233,226 - -0.4
233,234 + 0.5
233,235 - 0.0
233,235 + 1.1
233,236 + -0.1
233,236 + -1.0
233,240 - -1.7
233,242 + -0.5
233,245 - 0.0
233,247 + -0.3
233,248 + 1.7
233,249 - -0.4
233,252 - 2.5
233,257 + -1.0
233,258 + 0.5
233,258 - 1.2
233,258 + -0.2
233,260 + -1.0
233,303 - -0.1
233,304 + -0.2
233,304 + -0.2
233,309 + -1.6
233,309 + -0.6
233,312 + 1.1
233,318 - 0.5
233,324 - -0.1
233,325 - -0.8
233,327 + 0.7
233,330 - -0.3
233,331 - -0.1
233,331 - 0.7
233,334 + 0.2
233,338 - 0.7
233,340 + -1.2
233,346 - -0.1
233,347 + -0.4
233,349 + 1.3
233,353 + -1.0
233,356 + -1.0
233,356 - -0.5
233,359 - 0.0
233,360 - -0.7
233,361 - -1.1
233,370 - 0.7
233,374 + -0.4
233,385 + -1.9
233,386 - -0.1
233,485 - 0.7
233,502 - -0.4
233,508 + -0.5
233,513 + 0.8
233,514 - -0.2
233,639 + 0.6
233,830 + -0.6
233,860 - -2.2
233,926 + 0.9
233,950 - 0.3
233,966 + 0.0
234,238 + -1.0