Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2431

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2430: 10798 - K09467 MIG zinc-finger protein CreA/MIG, at 106611 to 109400 10798 mRNA_2431: 10799 - Hypothetical Protein, at 109919 to 110380 10799 mRNA_2432: 10800 - K20028 ZDHHC2_15_20 palmitoyltransferase ZDHHC2/15/20, at 111348 to 112998 10800

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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109,052 - 10798 mRNA_2430 0.87 -2.1
109,064 + 10798 mRNA_2430 0.88 -1.1
109,069 + 10798 mRNA_2430 0.88 -0.7
109,198 - 0.6
109,221 - 0.2
109,252 + 1.2
109,362 - -0.2
109,374 + 0.2
109,380 + -0.8
109,382 + -1.1
109,396 + -0.4
109,405 - 0.2
109,521 - 1.1
109,534 + 4.1
109,551 + 1.1
109,651 - 1.4
109,654 - -0.5
109,657 - -1.7
109,665 - 0.4
109,674 - 0.3
109,674 + 0.5
109,675 + -1.0
109,678 - 1.7
109,680 - 1.4
109,680 - -0.3
109,685 + -0.1
109,689 - 0.5
109,693 - 0.6
109,699 + 0.8
109,700 - 1.3
109,704 - 0.5
109,708 + -0.4
109,710 + -1.1
109,826 - -0.4
109,833 + 0.6
109,850 - 1.5
109,856 - 1.4
109,986 - 10799 mRNA_2431 0.15 0.1
110,000 - 10799 mRNA_2431 0.18 0.6
110,006 + 10799 mRNA_2431 0.19 -0.5
110,013 + 10799 mRNA_2431 0.20 0.9
110,033 - 10799 mRNA_2431 0.25 0.5
110,038 + 10799 mRNA_2431 0.26 0.5
110,050 - 10799 mRNA_2431 0.28 -1.7
110,055 - 10799 mRNA_2431 0.29 0.5
110,164 + 10799 mRNA_2431 0.53 -1.8
110,586 + 3.1
110,764 + -1.0
110,933 + -1.7
110,965 - -0.0
110,985 - 2.5
110,994 - -0.5
111,014 + 0.0
111,139 + 0.2
111,148 + -0.6
111,163 - -0.6
111,169 - -1.3
111,169 + -1.1
111,183 + -0.6
111,319 - -0.5
111,324 + -1.3