Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2427

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2426: 10794 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 92965 to 95698 10794 mRNA_2427: 10795 - Hypothetical Protein, at 96248 to 96907 10795 mRNA_2428: 10796 - KOG0583 Serine/threonine protein kinase, at 96972 to 102025 10796

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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95,274 - 10794 mRNA_2426 0.84 -0.4
95,336 - 10794 mRNA_2426 0.87 -2.2
95,671 - -0.8
95,787 - -0.9
95,806 + -1.3
95,828 + 1.3
95,971 - 0.7
95,971 + -0.3
96,107 + -1.1
96,148 - -0.2
96,152 - -0.4
96,247 - 0.9
96,267 - 0.7
96,272 + -0.6
96,278 + 0.4
96,280 - -0.8
96,286 - -1.9
96,299 - 0.1
96,308 - 0.3
96,317 - 10795 mRNA_2427 0.10 -0.1
96,328 + 10795 mRNA_2427 0.12 -0.7
96,412 + 10795 mRNA_2427 0.25 -0.5
96,423 - 10795 mRNA_2427 0.27 1.0
96,453 + 10795 mRNA_2427 0.31 -0.2
96,513 - 10795 mRNA_2427 0.40 0.0
96,535 + 10795 mRNA_2427 0.43 -1.8
96,543 - 10795 mRNA_2427 0.45 0.7
96,547 - 10795 mRNA_2427 0.45 1.0
96,548 + 10795 mRNA_2427 0.45 0.7
96,566 + 10795 mRNA_2427 0.48 0.2
96,575 + 10795 mRNA_2427 0.50 0.3
96,583 - 10795 mRNA_2427 0.51 2.2
96,583 + 10795 mRNA_2427 0.51 -0.5
96,584 + 10795 mRNA_2427 0.51 -1.7
96,586 + 10795 mRNA_2427 0.51 -1.2
96,634 + 10795 mRNA_2427 0.58 1.6
96,691 - 10795 mRNA_2427 0.67 0.1
96,705 + 10795 mRNA_2427 0.69 0.4
96,709 + 10795 mRNA_2427 0.70 1.1
96,809 + 10795 mRNA_2427 0.85 -0.5
96,855 - -0.6
96,859 + 1.4
96,861 + 1.5
96,874 + 2.7
97,057 + 0.4
97,128 + -0.8
97,276 - -0.6
97,621 + 10796 mRNA_2428 0.13 -0.6
97,711 + 10796 mRNA_2428 0.15 0.2
97,769 - 10796 mRNA_2428 0.16 -0.9
97,770 + 10796 mRNA_2428 0.16 -1.9
97,849 - 10796 mRNA_2428 0.17 -1.3