Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2420

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2419: 10787 - HMMPfam-Domain of unknown function (DUF4385)-PF14328, at 79410 to 80151 10787 mRNA_2420: 10788 - KOG2618 Uncharacterized conserved protein, at 80430 to 82352 10788 mRNA_2421: 10789 - K11800 WDR22, BCRP2 WD repeat-containing protein 22, at 82479 to 84495 10789

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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79,745 - 10787 mRNA_2419 0.45 -1.1
79,768 + 10787 mRNA_2419 0.48 0.5
79,852 - 10787 mRNA_2419 0.60 0.2
80,030 - 10787 mRNA_2419 0.84 1.4
80,044 - 10787 mRNA_2419 0.85 0.8
80,321 + -1.1
80,325 - -0.6
80,334 - 1.1
80,346 + -0.9
80,349 - 0.6
80,481 - -1.3
80,485 - -1.5
80,663 + 10788 mRNA_2420 0.12 2.0
80,760 + 10788 mRNA_2420 0.17 -0.0
80,781 - 10788 mRNA_2420 0.18 -1.0
80,918 + 10788 mRNA_2420 0.25 -1.9
81,041 - 10788 mRNA_2420 0.32 0.3
81,083 + 10788 mRNA_2420 0.34 -0.2
81,323 - 10788 mRNA_2420 0.46 0.8
81,341 + 10788 mRNA_2420 0.47 -2.2
81,431 - 10788 mRNA_2420 0.52 -0.1
81,484 - 10788 mRNA_2420 0.55 2.0
81,764 + 10788 mRNA_2420 0.69 1.1
82,499 - -0.9
82,566 - -0.1
83,061 - 10789 mRNA_2421 0.29 -2.2
83,246 + 10789 mRNA_2421 0.38 1.5