Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2412

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2411: 10779 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF81383, at 60970 to 61863 10779 mRNA_2412: 10780 - K04378 SRF serum response factor, at 62318 to 64458 10780 mRNA_2413: 10781 - K13108 SNIP1 smad nuclear-interacting protein 1, at 64935 to 66206 10781

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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61,418 - 10779 mRNA_2411 0.50 -0.4
61,458 + 10779 mRNA_2411 0.55 -0.5
61,481 + 10779 mRNA_2411 0.57 0.8
61,589 + 10779 mRNA_2411 0.69 0.5
61,667 + 10779 mRNA_2411 0.78 -0.8
61,759 - 10779 mRNA_2411 0.88 0.7
61,768 - 10779 mRNA_2411 0.89 0.8
61,836 + -2.6
61,903 - -1.2
62,050 - -0.7
62,113 + -1.3
62,200 - -0.8
62,777 + 10780 mRNA_2412 0.21 0.7
62,808 + 10780 mRNA_2412 0.23 0.4
63,079 - 10780 mRNA_2412 0.36 1.9
63,583 - 10780 mRNA_2412 0.59 -0.8
63,747 - 10780 mRNA_2412 0.67 1.4
63,791 - 10780 mRNA_2412 0.69 0.2
63,835 + 10780 mRNA_2412 0.71 -0.0
63,989 - 10780 mRNA_2412 0.78 -0.7
64,275 + -0.3
64,299 - -0.2
64,712 + -2.1
64,722 - -1.6
64,768 - 0.3
64,880 + -2.0
64,899 - 0.4
64,899 + -0.2
64,900 + 0.0
64,902 - 0.6
64,902 + 0.3
64,913 + 2.4
64,928 + 0.4