Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2408

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2407: 10775 - K10880 XRCC3 DNA-repair protein XRCC3, at 53086 to 55006 10775 mRNA_2408: 10776 - K07975 K07975 Rho family, other, at 55235 to 56824 10776 mRNA_2409: 10777 - Hypothetical Protein, at 56909 to 58334 10777

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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54,324 - 10775 mRNA_2407 0.64 -0.1
55,274 - -1.8
55,304 + -1.1
55,597 - 10776 mRNA_2408 0.23 -1.6
55,740 + 10776 mRNA_2408 0.32 -2.3
56,154 + 10776 mRNA_2408 0.58 1.8
56,323 + 10776 mRNA_2408 0.68 -1.9
56,374 - 10776 mRNA_2408 0.72 -3.3
56,393 + 10776 mRNA_2408 0.73 -3.3
56,410 - 10776 mRNA_2408 0.74 -3.3
56,503 + 10776 mRNA_2408 0.80 -0.5
56,511 - 10776 mRNA_2408 0.80 -1.7
56,652 - 10776 mRNA_2408 0.89 -1.2
56,763 + 0.1
56,764 + 0.6
56,792 - -0.9
56,927 - -1.9
56,941 - 1.4
56,953 + -0.7
57,091 + 10777 mRNA_2409 0.13 0.5
57,101 + 10777 mRNA_2409 0.13 -0.4
57,130 - 10777 mRNA_2409 0.15 -1.5
57,384 + 10777 mRNA_2409 0.33 -0.4
57,701 + 10777 mRNA_2409 0.56 -1.0