Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2366

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2365: 10733 - HMMPfam-C2 domain-PF00168,HMMPfam-Munc13 (mammalian uncoordinated) homology domain-PF10540,ProSiteProfiles-Munc13-homology domain 1 (MHD1) profile.-PS51258,ProSiteProfiles-Munc13-homology domain 2 (MHD2) profile.-PS51259,SMART-Protein kinase C conserved region 2 (CalB)-SM00239,SUPERFAMILY--SSF49562, at 714836 to 719439 10733 mRNA_2366: 10734 - HMMPfam-GDP/GTP exchange factor Sec2p-PF06428,SUPERFAMILY--SSF144284, at 719929 to 722612 10734 mRNA_2367: 10735 - HMMPfam-Salt tolerance down-regulator-PF13945, at 723290 to 728071 10735

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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719,056 - -3.9
719,065 + -2.3
719,207 - -2.8
719,348 + -3.1
719,356 - -3.9
719,361 + -5.2
719,499 - -2.4
719,553 + -1.7
719,622 - 1.6
719,628 - 1.0
719,777 - -0.5
719,796 + 1.1
720,202 + 10734 mRNA_2366 0.10 -0.5
720,261 + 10734 mRNA_2366 0.12 -0.3
720,376 - 10734 mRNA_2366 0.17 -0.3
720,706 + 10734 mRNA_2366 0.29 0.4
720,948 + 10734 mRNA_2366 0.38 -0.8
721,114 + 10734 mRNA_2366 0.44 0.2
721,403 + 10734 mRNA_2366 0.55 0.8
721,583 + 10734 mRNA_2366 0.62 0.6
721,682 - 10734 mRNA_2366 0.65 0.3
722,410 - 1.1
722,537 - -1.3
722,564 + -1.6
722,898 + 0.5
723,004 - 1.1
723,009 + 1.3
723,030 - 0.2
723,039 - -2.6