Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2364

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2363: 10731 - KOG0017 FOG Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations, at 709959 to 711160 10731 mRNA_2364: 10732 - K20471 COPD, ARCN1, RET2 coatomer subunit delta, at 712006 to 714085 10732 mRNA_2365: 10733 - HMMPfam-C2 domain-PF00168,HMMPfam-Munc13 (mammalian uncoordinated) homology domain-PF10540,ProSiteProfiles-Munc13-homology domain 1 (MHD1) profile.-PS51258,ProSiteProfiles-Munc13-homology domain 2 (MHD2) profile.-PS51259,SMART-Protein kinase C conserved region 2 (CalB)-SM00239,SUPERFAMILY--SSF49562, at 714836 to 719439 10733

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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711,036 - 10731 mRNA_2363 0.90 -0.8
711,042 + 0.2
711,465 - -0.2
711,507 - -0.6
711,509 - -1.4
711,677 + -1.2
711,718 + 0.5
711,722 - -1.0
711,722 + 0.1
711,729 - 0.3
711,743 + 0.5
713,282 - 10732 mRNA_2364 0.61 1.5
714,312 - 1.4
714,324 + 0.1
714,477 + -0.3
714,485 - 1.9
714,612 - -0.2
714,616 - 1.4
714,788 - -2.9