Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2342

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2341: 10709 - K03021 RPC2, POLR3B DNA-directed RNA polymerase III subunit RPC2, at 663077 to 667244 10709 mRNA_2342: 10710 - Hypothetical Protein, at 667459 to 669644 10710 mRNA_2343: 10711 - HMMPfam-GPR1/FUN34/yaaH family-PF01184, at 669815 to 670967 10711

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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667,532 - 0.6
667,551 - 0.1
667,673 + 0.3
667,692 - 10710 mRNA_2342 0.11 1.4
667,712 - 10710 mRNA_2342 0.12 -1.1
667,715 + 10710 mRNA_2342 0.12 -0.3
667,721 + 10710 mRNA_2342 0.12 0.4
667,729 - 10710 mRNA_2342 0.12 1.5
667,799 - 10710 mRNA_2342 0.16 0.4
667,846 - 10710 mRNA_2342 0.18 -0.9
667,965 - 10710 mRNA_2342 0.23 -0.3
667,976 + 10710 mRNA_2342 0.24 -1.0
667,994 - 10710 mRNA_2342 0.24 -0.6
668,273 - 10710 mRNA_2342 0.37 1.5
668,282 + 10710 mRNA_2342 0.38 -0.3
668,559 + 10710 mRNA_2342 0.50 0.4
669,314 - 10710 mRNA_2342 0.85 -1.3
669,337 - 10710 mRNA_2342 0.86 0.5
669,450 - -1.5
669,693 + -0.3
670,027 - 10711 mRNA_2343 0.18 0.3
670,315 + 10711 mRNA_2343 0.43 -1.0
670,592 + 10711 mRNA_2343 0.67 -2.8