Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2334

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2333: 10701 - KOG1159 NADP-dependent flavoprotein reductase, at 642663 to 645138 10701 mRNA_2334: 10702 - K17815 EXO5 exonuclease V, at 645370 to 647887 10702 mRNA_2335: 10703 - K20098 ERCC6L2 DNA excision repair protein ERCC-6-like 2, at 648018 to 653331 10703

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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645,292 - 0.5
645,319 + -1.2
645,327 + -0.7
645,358 - 0.3
645,364 - -1.9
645,458 - 1.1
645,482 + -0.7
645,629 + 10702 mRNA_2334 0.10 0.5
646,071 + 10702 mRNA_2334 0.28 0.9
646,084 + 10702 mRNA_2334 0.28 0.2
646,242 + 10702 mRNA_2334 0.35 0.4
646,494 - 10702 mRNA_2334 0.45 0.1
646,780 - 10702 mRNA_2334 0.56 -1.9
646,811 - 10702 mRNA_2334 0.57 -1.8
646,964 - 10702 mRNA_2334 0.63 -2.8
647,088 - 10702 mRNA_2334 0.68 -0.8
647,271 + 10702 mRNA_2334 0.75 0.4
647,718 + -0.9
647,816 - -1.0
648,233 + -0.6
648,358 + 0.1
648,687 - 10703 mRNA_2335 0.13 0.7
648,707 - 10703 mRNA_2335 0.13 -1.6