Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2302

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2301: 10669 - HMMPfam-Transmembrane amino acid transporter protein-PF01490, at 560287 to 562676 10669 mRNA_2302: 10670 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 563015 to 564806 10670 mRNA_2303: 10671 - Hypothetical Protein, at 565712 to 566657 10671

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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562,138 - 10669 mRNA_2301 0.77 0.9
562,584 - -1.3
562,611 + -0.8
562,742 - 1.2
562,890 - -0.3
563,057 + 1.6
563,061 - -0.3
563,175 - 0.2
563,531 + 10670 mRNA_2302 0.29 0.2
563,792 + 10670 mRNA_2302 0.43 0.4
563,948 + 10670 mRNA_2302 0.52 -0.2
564,255 + 10670 mRNA_2302 0.69 -0.8
564,390 + 10670 mRNA_2302 0.77 1.6
564,394 - 10670 mRNA_2302 0.77 -0.3
564,399 + 10670 mRNA_2302 0.77 -0.7
564,408 + 10670 mRNA_2302 0.78 -1.3
564,551 - 10670 mRNA_2302 0.86 -0.1
564,559 + 10670 mRNA_2302 0.86 -0.8
564,568 + 10670 mRNA_2302 0.87 0.9
564,576 - 10670 mRNA_2302 0.87 -0.1
564,716 + 0.0
564,717 + -0.5
564,725 + 0.2
564,763 - 0.1
564,862 + -1.2
564,863 + 0.1
564,867 + -0.5
564,870 + 1.4
564,875 - -0.2
564,886 - 0.1
564,892 + -1.8
564,982 + 0.3
564,987 - 1.7
564,989 + -0.9
564,996 - -1.2
564,997 + -0.2
564,998 - 1.7
565,002 + -1.6
565,009 + 0.7
565,109 - -0.1
565,134 + 1.3
565,136 + -0.9
565,162 + 0.5
565,181 + -0.7
565,188 - -3.5
565,194 + -1.2
565,194 + 0.1
565,207 + 1.5
565,223 + 0.2
565,315 + 0.6
565,316 + 2.7
565,327 - -0.2
565,333 - 0.1
565,339 + 1.4
565,360 - 0.0
565,377 - -1.4
565,388 + 0.2
565,390 - 0.0
565,391 + 0.9
565,395 - -0.5
565,405 + 0.2
565,408 + 0.1
565,416 - 0.6
565,416 + -1.1
565,427 - -0.1
565,432 - 1.2
565,433 + -0.7
565,456 + 0.3
565,561 - -2.3
565,601 + -1.5