Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2278

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2277: 10645 - K13717 OTUD3 OTU domain-containing protein 3, at 502464 to 504545 10645 mRNA_2278: 10646 - KOG1118 Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation, at 504709 to 506668 10646 mRNA_2279: 10647 - K16369 CHO2 phosphatidylethanolamine N-methyltransferase, at 506960 to 510896 10647

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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503,798 + 10645 mRNA_2277 0.64 -0.8
504,244 - 10645 mRNA_2277 0.85 -0.6
504,535 - -1.6
504,809 - -2.0
504,920 + 10646 mRNA_2278 0.11 -0.2
505,202 - 10646 mRNA_2278 0.25 -0.6
505,524 + 10646 mRNA_2278 0.42 0.4
506,394 - 10646 mRNA_2278 0.86 0.6
506,573 - 0.3
506,579 + -1.5
506,580 - -1.3
506,712 + 0.3
506,714 + -1.5
506,718 - -0.9
506,720 + 0.2
506,843 + -0.4
506,861 - 0.3
506,867 - 1.1
506,887 - -1.0
507,019 + 0.6
507,156 + -3.1
507,290 - -1.3
507,434 - 10647 mRNA_2279 0.12 -2.1
507,447 + 10647 mRNA_2279 0.12 -1.3
507,469 + 10647 mRNA_2279 0.13 -1.1
507,471 + 10647 mRNA_2279 0.13 -3.8
507,587 + 10647 mRNA_2279 0.16 -2.3