Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2274

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2273: 10641 - K14787 MRD1, RBM19 multiple RNA-binding domain-containing protein 1, at 496371 to 499098 10641 mRNA_2274: 10642 - KOG2352 Predicted spermine/spermidine synthase, at 499245 to 500264 10642 mRNA_2275: 10643 - HMMPfam-MAPEG family-PF01124,SUPERFAMILY--SSF161084, at 500597 to 501422 10643

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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499,152 + 0.0
499,162 + 0.8
499,167 - 1.1
499,169 - 0.9
499,171 + -0.1
499,173 - 0.7
499,195 - 0.3
499,203 + 0.8
499,239 + 0.1
499,353 + 10642 mRNA_2274 0.11 -1.8
499,608 - 10642 mRNA_2274 0.36 0.9
499,615 + 10642 mRNA_2274 0.36 0.4
499,625 - 10642 mRNA_2274 0.37 1.0
499,912 + 10642 mRNA_2274 0.65 0.5
500,061 - 10642 mRNA_2274 0.80 0.8
500,071 - 10642 mRNA_2274 0.81 -1.5
500,248 + 0.0
500,361 - 0.7
500,397 + -1.0
500,398 + 0.5
500,401 + -1.6
500,434 + 1.7
500,522 - -0.9
500,532 + 1.6
500,537 + -1.2
500,540 + 1.3
500,556 - 1.3
500,663 + -1.0
500,668 + 0.5
500,688 - 10643 mRNA_2275 0.11 -0.4
500,835 - 10643 mRNA_2275 0.29 -0.4
500,986 - 10643 mRNA_2275 0.47 -0.4
501,124 + 10643 mRNA_2275 0.64 1.5