Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2271

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2270: 10638 - K19833 CLA4 serine/threonine-protein kinase CLA4, at 492259 to 494809 10638 mRNA_2271: 10639 - Hypothetical Protein, at 494808 to 495275 10639 mRNA_2272: 10640 - Hypothetical Protein, at 495737 to 495928 10640

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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493,824 - 10638 mRNA_2270 0.61 1.2
493,965 + 10638 mRNA_2270 0.67 3.8
493,981 - 10638 mRNA_2270 0.68 4.7
494,113 + 10638 mRNA_2270 0.73 2.4
494,375 - 10638 mRNA_2270 0.83 3.7
494,381 - 10638 mRNA_2270 0.83 3.8
494,435 - 10638 mRNA_2270 0.85 3.5
494,456 + 10638 mRNA_2270 0.86 3.9
494,549 - 10638 mRNA_2270 0.90 5.2
494,698 - 2.1
494,708 + 3.3
494,713 + 2.9
494,848 + 0.4
494,855 - 10639 mRNA_2271 0.10 1.6
494,855 - 10639 mRNA_2271 0.10 -0.7
494,857 + 10639 mRNA_2271 0.10 -0.5
494,858 + 10639 mRNA_2271 0.11 -0.1
494,880 - 10639 mRNA_2271 0.15 0.9
494,906 - 10639 mRNA_2271 0.21 1.3
494,986 + 10639 mRNA_2271 0.38 -0.1
495,001 + 10639 mRNA_2271 0.41 -1.3
495,006 + 10639 mRNA_2271 0.42 -0.6
495,007 - 10639 mRNA_2271 0.43 0.5
495,033 - 10639 mRNA_2271 0.48 0.8
495,044 + 10639 mRNA_2271 0.50 0.8
495,155 - 10639 mRNA_2271 0.74 0.4
495,160 - 10639 mRNA_2271 0.75 -0.6
496,054 - -0.4
496,056 - -0.9