Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2237

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2236: 10604 - KOG3098 Uncharacterized conserved protein, at 432656 to 434707 10604 mRNA_2237: 10605 - KOG1794 N-Acetylglucosamine kinase, at 435285 to 436613 10605 mRNA_2238: 10606 - K20813 TDG thymine-DNA glycosylase, at 436751 to 438235 10606

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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434,327 - 10604 mRNA_2236 0.81 -0.2
434,454 - 10604 mRNA_2236 0.88 -0.6
434,463 + 10604 mRNA_2236 0.88 0.5
434,577 - 0.2
434,581 - 0.6
434,653 + -2.7
434,718 + 0.9
434,739 + 1.2
434,746 - 0.9
434,757 + 0.6
434,774 + 0.2
434,775 + 1.3
434,777 + -1.7
434,798 + 0.6
434,800 - 2.4
434,808 + -0.8
434,821 + 1.2
434,822 + -2.3
434,831 + 0.5
434,838 - -0.5
434,846 - 0.8
434,850 - 1.6
434,851 + -0.8
434,863 - 0.1
434,867 - 0.7
434,871 + 1.7
434,873 + -0.0
434,874 - 0.2
434,875 - 0.6
434,877 + 0.7
434,883 - 0.6
434,886 - 0.1
434,893 - 1.0
434,898 - 0.6
434,900 - 0.5
434,902 + 0.1
434,904 - -0.4
434,910 - 0.8
434,915 + -0.6
434,921 + -0.2
434,924 - -1.1
434,925 + -1.9
434,929 - 0.2
434,929 + 1.6
434,934 - 0.1
434,935 - -0.5
434,935 + 0.4
434,936 - -0.2
434,938 - -0.0
434,942 - 0.8
434,943 - 0.8
434,947 + -0.6
434,950 - -1.3
434,953 - -1.3
434,966 + -0.8
434,989 - 0.6
434,998 - 1.3
435,070 - 2.5
435,080 + -0.1
435,095 - -0.6
435,098 - 0.3
435,407 + 1.2
435,806 - 10605 mRNA_2237 0.39 -0.3
435,972 - 10605 mRNA_2237 0.52 0.9
435,980 - 10605 mRNA_2237 0.52 0.6
436,074 - 10605 mRNA_2237 0.59 -0.4
436,264 + 10605 mRNA_2237 0.74 2.0
436,511 - 0.6
436,847 - -0.8
437,220 - 10606 mRNA_2238 0.32 0.4
437,269 + 10606 mRNA_2238 0.35 0.1
437,398 - 10606 mRNA_2238 0.44 -0.9