Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2225

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2224: 10592 - KOG2653 6-phosphogluconate dehydrogenase, at 400569 to 403367 10592 mRNA_2225: 10593 - Hypothetical Protein, at 403974 to 404899 10593 mRNA_2226: 10594 - SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717, at 405486 to 409218 10594

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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403,168 + 0.3
403,550 - -1.3
403,574 - -0.6
403,613 - -1.3
403,709 + -1.7
403,735 + 0.0
403,736 + 0.5
403,740 + -0.4
403,743 - -1.7
403,746 + 1.8
403,753 + 1.1
403,780 - -0.7
403,843 - 0.7
403,870 + -0.3
403,870 - 0.6
403,873 - 0.2
403,876 - 0.5
403,880 - -0.4
403,900 + 0.2
403,906 + 0.2
403,908 + 0.2
403,909 + 0.6
403,911 + 1.0
403,920 - -0.8
403,922 - -0.0
403,925 + 1.0
404,054 + -0.4
404,075 - 10593 mRNA_2225 0.11 -0.4
404,088 + 10593 mRNA_2225 0.12 0.0
404,093 + 10593 mRNA_2225 0.13 0.5
404,197 - 10593 mRNA_2225 0.24 -0.6
404,221 + 10593 mRNA_2225 0.27 0.8
404,223 - 10593 mRNA_2225 0.27 -0.7
404,223 - 10593 mRNA_2225 0.27 -0.9
404,339 - 10593 mRNA_2225 0.39 -1.0
404,370 - 10593 mRNA_2225 0.43 -0.0
404,381 - 10593 mRNA_2225 0.44 0.1
404,631 + 10593 mRNA_2225 0.71 0.1
404,634 - 10593 mRNA_2225 0.71 -0.6
404,671 + 10593 mRNA_2225 0.75 1.4
405,099 + -0.7
405,199 - -0.1
405,356 - 1.5
405,358 + -0.1
405,368 - -2.8
405,372 + -1.0
405,395 + 0.4
405,674 - -0.6
405,801 - 1.3