Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2224

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2223: 10591 - Hypothetical Protein, at 398551 to 400277 10591 mRNA_2224: 10592 - KOG2653 6-phosphogluconate dehydrogenase, at 400569 to 403367 10592 mRNA_2225: 10593 - Hypothetical Protein, at 403974 to 404899 10593

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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399,666 - 10591 mRNA_2223 0.65 -0.9
399,668 + 10591 mRNA_2223 0.65 0.4
399,677 + 10591 mRNA_2223 0.65 -0.8
399,709 - 10591 mRNA_2223 0.67 0.7
399,818 - 10591 mRNA_2223 0.73 -0.0
399,946 - 10591 mRNA_2223 0.81 -0.2
400,269 - 0.9
400,418 + 0.3
400,568 + 1.9
400,741 - -1.3
400,819 + -1.5
400,863 + 10592 mRNA_2224 0.11 -1.2
400,958 - 10592 mRNA_2224 0.14 -0.5
400,973 + 10592 mRNA_2224 0.14 -2.8
400,986 + 10592 mRNA_2224 0.15 -3.1
401,003 - 10592 mRNA_2224 0.16 -1.3
401,125 - 10592 mRNA_2224 0.20 -1.8
401,137 + 10592 mRNA_2224 0.20 -1.8
401,141 - 10592 mRNA_2224 0.20 -1.4
401,141 - 10592 mRNA_2224 0.20 -2.9
401,209 - 10592 mRNA_2224 0.23 -1.3
401,289 + 10592 mRNA_2224 0.26 -0.4
401,290 + 10592 mRNA_2224 0.26 2.5
401,293 + 10592 mRNA_2224 0.26 0.4
401,303 + 10592 mRNA_2224 0.26 0.5
401,437 - 10592 mRNA_2224 0.31 -1.3
401,464 - 10592 mRNA_2224 0.32 1.4
401,587 - 10592 mRNA_2224 0.36 1.7
401,612 + 10592 mRNA_2224 0.37 0.7
401,884 + 10592 mRNA_2224 0.47 1.7
402,216 + 10592 mRNA_2224 0.59 -0.3
402,425 + 10592 mRNA_2224 0.66 1.4
402,591 + 10592 mRNA_2224 0.72 2.0
402,855 - 10592 mRNA_2224 0.82 -0.1
403,168 + 0.3
403,550 - -1.3
403,574 - -0.6
403,613 - -1.3
403,709 + -1.7
403,735 + 0.0
403,736 + 0.5
403,740 + -0.4
403,743 - -1.7
403,746 + 1.8
403,753 + 1.1
403,780 - -0.7
403,843 - 0.7
403,870 + -0.3
403,870 - 0.6
403,873 - 0.2
403,876 - 0.5
403,880 - -0.4
403,900 + 0.2
403,906 + 0.2
403,908 + 0.2
403,909 + 0.6
403,911 + 1.0
403,920 - -0.8
403,922 - -0.0
403,925 + 1.0
404,054 + -0.4
404,075 - 10593 mRNA_2225 0.11 -0.4
404,088 + 10593 mRNA_2225 0.12 0.0
404,093 + 10593 mRNA_2225 0.13 0.5
404,197 - 10593 mRNA_2225 0.24 -0.6
404,221 + 10593 mRNA_2225 0.27 0.8
404,223 - 10593 mRNA_2225 0.27 -0.7
404,223 - 10593 mRNA_2225 0.27 -0.9
404,339 - 10593 mRNA_2225 0.39 -1.0