Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2218

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2217: 10585 - KOG2199 Signal transducing adaptor protein STAM/STAM2, at 382345 to 384541 10585 mRNA_2218: 10586 - SUPERFAMILY--SSF52047, at 384694 to 386223 10586 mRNA_2219: 10587 - Hypothetical Protein, at 386723 to 388300 10587

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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383,742 - 10585 mRNA_2217 0.64 -0.3
383,882 + 10585 mRNA_2217 0.70 -1.5
383,904 - 10585 mRNA_2217 0.71 -0.9
384,124 - 10585 mRNA_2217 0.81 -1.6
384,288 + 10585 mRNA_2217 0.88 -2.5
384,459 + -0.1
384,511 + 2.7
385,121 + 10586 mRNA_2218 0.28 1.1
385,242 - 10586 mRNA_2218 0.36 0.5
385,274 + 10586 mRNA_2218 0.38 0.2
385,428 - 10586 mRNA_2218 0.48 0.0
385,443 - 10586 mRNA_2218 0.49 -0.3
385,554 + 10586 mRNA_2218 0.56 1.1
385,702 - 10586 mRNA_2218 0.66 -0.5
385,712 + 10586 mRNA_2218 0.67 1.1
385,718 - 10586 mRNA_2218 0.67 -0.1
385,734 + 10586 mRNA_2218 0.68 0.5
385,912 + 10586 mRNA_2218 0.80 -1.0
386,072 + 0.1
386,072 + -0.2
386,307 - -1.3
386,325 + -0.1
386,337 + 1.0
386,498 + 0.5
386,780 + -0.1
386,960 - 10587 mRNA_2219 0.15 -0.4
387,063 - 10587 mRNA_2219 0.22 0.6
387,216 - 10587 mRNA_2219 0.31 0.2