Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2215

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2214: 10582 - K06970 rlmF 23S rRNA (adenine1618-N6)-methyltransferase, at 376563 to 378868 10582 mRNA_2215: 10583 - K01737 queD, ptpS, PTS 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase, at 379007 to 379807 10583 mRNA_2216: 10584 - BLAST Oligosaccharide translocation protein RFT1 [Termitomy..., at 380175 to 381550 10584

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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378,430 + 10582 mRNA_2214 0.81 -0.1
378,697 + -0.3
379,114 - 10583 mRNA_2215 0.13 1.2
379,131 - 10583 mRNA_2215 0.15 -0.3
379,279 - 10583 mRNA_2215 0.34 -1.2
379,571 + 10583 mRNA_2215 0.70 0.9
379,702 - 10583 mRNA_2215 0.87 -0.4
379,815 - -0.1
379,834 - -1.6
379,838 - -0.1
380,007 + 0.6
380,024 - 0.0
380,116 - -0.1
380,116 + 0.4
380,139 + -0.7
380,290 - 0.9
380,296 - 1.1
380,586 + 10584 mRNA_2216 0.30 0.7
380,731 - 10584 mRNA_2216 0.40 -1.1