Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2211

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2210: 10578 - K20407 MIOS, MIO WD repeat-containing protein mio, at 363303 to 367211 10578 mRNA_2211: 10579 - K09486 HYOU1 hypoxia up-regulated 1, at 367556 to 370614 10579 mRNA_2212: 10580 - K04441 P38 p38 MAP kinase, at 371280 to 373458 10580

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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366,870 + -0.5
366,988 - -0.2
367,265 + 1.2
367,297 - 0.1
367,339 + 0.8
367,360 + 0.3
367,447 - 0.5
367,477 + 0.5
367,477 + -2.2
367,477 + -0.4
368,933 - 10579 mRNA_2211 0.45 0.3
370,233 + 10579 mRNA_2211 0.88 -0.6
370,549 + 1.8
370,662 - -2.6
370,663 - -1.8
370,666 - -0.3
370,672 - -0.1
370,693 + 1.7
370,739 - -1.1
370,739 - 1.8
370,791 - 0.8
370,813 + 0.5
370,815 - -0.0
370,816 - -0.3
370,816 + -0.3
370,824 - -1.0
370,837 - 0.0
370,840 - 0.5
370,845 - -0.0
370,849 + -0.1
370,859 - 1.5
370,859 - 0.6
370,861 - 0.6
370,862 + -0.4
370,863 + -0.3
370,864 + 0.1
370,864 + 0.3
370,866 - -0.9
370,870 + 0.4
370,891 - -1.3
370,892 + 0.4
370,896 + -1.1
370,896 - 2.2
370,899 + -0.2
370,923 + 0.2
370,931 - -0.6
370,938 + 0.2
370,956 - -0.7
370,973 + 1.2
370,974 - -0.9
370,974 + -0.2
371,070 - -0.4
371,073 + 1.4
371,086 - -0.2
371,087 - 2.0
371,088 - -0.7
371,089 + -0.3
371,093 + -0.7
371,093 - -0.1
371,095 + 0.4
371,101 + -0.9
371,103 - 2.2
371,104 + -0.8
371,111 - 0.6
371,118 + 0.5
371,120 + -0.2
371,127 + -2.4
371,127 + 0.0
371,127 + 1.5
371,560 + 10580 mRNA_2212 0.13 -1.9
371,561 + 10580 mRNA_2212 0.13 -1.7