Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2201

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2200: 10568 - K11423 SETD2, SET2 histone-lysine N-methyltransferase SETD2, at 335567 to 339379 10568 mRNA_2201: 10569 - K03005 RPA49, POLR1E DNA-directed RNA polymerase I subunit RPA49, at 339616 to 341199 10569 mRNA_2202: 10570 - K00365 uaZ urate oxidase, at 341518 to 342881 10570

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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338,832 + 10568 mRNA_2200 0.86 0.1
339,140 - -1.8
339,277 + -0.5
339,409 + 0.3
339,435 + -0.7
339,441 + 2.4
339,445 + -0.7
339,455 - 0.1
339,539 + 0.6
339,553 - 0.9
339,577 - 0.0
339,585 + 0.6
339,700 - -0.5
339,700 + -0.7
339,716 - -0.4
339,719 + -0.8
339,727 - 0.7
339,881 - 10569 mRNA_2201 0.17 -0.3
339,897 + 10569 mRNA_2201 0.18 -1.4
339,911 + 10569 mRNA_2201 0.19 0.8
340,147 - 10569 mRNA_2201 0.34 0.5
341,027 - 10569 mRNA_2201 0.89 0.2
341,047 + -0.1
341,189 - -0.5
341,238 + -0.1
341,348 - -4.4
341,502 - 0.5
341,513 - 1.2
341,523 + -0.5
341,562 - 0.8
341,580 - 0.2
341,586 + 0.1
341,660 + 10570 mRNA_2202 0.10 -1.4
341,727 + 10570 mRNA_2202 0.15 1.3
341,844 + 10570 mRNA_2202 0.24 0.3
341,909 + 10570 mRNA_2202 0.29 3.1
341,924 + 10570 mRNA_2202 0.30 1.0
342,046 - 10570 mRNA_2202 0.39 -2.3
342,076 - 10570 mRNA_2202 0.41 -0.9
342,162 - 10570 mRNA_2202 0.47 0.7