Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2170

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2169: 10537 - Hypothetical Protein, at 239219 to 240668 10537 mRNA_2170: 10538 - K20294 COG7 conserved oligomeric Golgi complex subunit 7, at 240753 to 243794 10538 mRNA_2171: 10539 - K06877 K06877 DEAD/DEAH box helicase domain-containing protein, at 244214 to 249218 10539

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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239,844 + 10537 mRNA_2169 0.43 -1.5
239,905 - 10537 mRNA_2169 0.47 1.4
240,128 + 10537 mRNA_2169 0.63 0.3
240,181 - 10537 mRNA_2169 0.66 -0.1
240,277 - 10537 mRNA_2169 0.73 -3.6
240,336 - 10537 mRNA_2169 0.77 -0.1
240,438 - 10537 mRNA_2169 0.84 0.8
240,602 + -0.2
240,823 - -2.0
240,909 + 0.7
240,914 + 1.0
241,049 + 0.5
241,314 + 10538 mRNA_2170 0.18 1.8
241,632 - 10538 mRNA_2170 0.29 2.4
241,657 + 10538 mRNA_2170 0.30 0.6
241,776 + 10538 mRNA_2170 0.34 -0.3
241,777 - 10538 mRNA_2170 0.34 1.0
242,348 - 10538 mRNA_2170 0.52 1.6
242,386 - 10538 mRNA_2170 0.54 0.7
242,556 + 10538 mRNA_2170 0.59 0.9
242,568 + 10538 mRNA_2170 0.60 0.8
242,807 + 10538 mRNA_2170 0.68 0.8
242,984 - 10538 mRNA_2170 0.73 -0.5
243,112 + 10538 mRNA_2170 0.78 2.6
243,260 - 10538 mRNA_2170 0.82 -0.5
243,889 + 2.9
244,018 - 1.6
244,023 - -0.3
244,023 + 0.7
244,162 + 0.2
244,163 - 0.5
244,163 - 0.5
244,182 - -0.7
244,188 + 0.4
244,272 + -0.4
244,455 - 0.8
244,489 + -0.1
244,624 - 0.3
244,626 + 0.2