Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2168

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2167: 10535 - K03143 TFIIH3, GTF2H3, TFB4 transcription initiation factor TFIIH subunit 3, at 236232 to 237790 10535 mRNA_2168: 10536 - Hypothetical Protein, at 237845 to 238808 10536 mRNA_2169: 10537 - Hypothetical Protein, at 239219 to 240668 10537

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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237,805 - -1.2
237,911 - 0.1
237,926 + -0.8
237,932 - 0.6
238,036 + 10536 mRNA_2168 0.20 -0.6
238,070 - 10536 mRNA_2168 0.23 0.5
238,180 + 10536 mRNA_2168 0.35 -0.7
238,188 + 10536 mRNA_2168 0.36 -0.0
238,191 - 10536 mRNA_2168 0.36 -0.9
238,197 - 10536 mRNA_2168 0.37 0.9
238,197 + 10536 mRNA_2168 0.37 -1.3
238,197 + 10536 mRNA_2168 0.37 -0.7
238,203 - 10536 mRNA_2168 0.37 0.1
238,355 - 10536 mRNA_2168 0.53 -3.3
238,401 + 10536 mRNA_2168 0.58 0.1
238,421 - 10536 mRNA_2168 0.60 -0.1
238,525 - 10536 mRNA_2168 0.71 -0.5
238,656 + 10536 mRNA_2168 0.84 1.0
238,665 + 10536 mRNA_2168 0.85 -0.8
238,670 - 10536 mRNA_2168 0.86 0.1
238,705 - 10536 mRNA_2168 0.89 2.4
238,947 - -1.3
238,958 + -0.2
239,120 + -1.2
239,125 - -0.4
239,360 - -0.6
239,387 - 10537 mRNA_2169 0.12 1.0
239,419 + 10537 mRNA_2169 0.14 1.2
239,550 + 10537 mRNA_2169 0.23 2.2
239,734 + 10537 mRNA_2169 0.36 0.1