Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2164

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2163: 10531 - K18468 VPS35 vacuolar protein sorting-associated protein 35, at 226223 to 229992 10531 mRNA_2164: 10532 - K10736 MCM10 minichromosome maintenance protein 10, at 230193 to 233259 10532 mRNA_2165: 10533 - Hypothetical Protein, at 233429 to 233973 10533

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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230,256 - -1.9
230,306 + 0.2
230,563 - 10532 mRNA_2164 0.12 -0.3
230,634 + 10532 mRNA_2164 0.14 -1.4
230,657 - 10532 mRNA_2164 0.15 -0.7
233,312 - -0.8
233,317 - 1.1
233,337 + 0.7
233,342 + 0.1
233,344 - -0.7
233,351 - -0.5
233,354 - 0.9
233,357 + 0.6
233,358 + 1.5
233,359 - -0.0
233,369 + -0.8
233,369 + -0.9
233,372 - 2.7
233,375 + -1.0
233,447 - -1.8
233,487 - 10533 mRNA_2165 0.11 0.8
233,499 - 10533 mRNA_2165 0.13 -0.2
233,525 - 10533 mRNA_2165 0.18 0.7
233,529 + 10533 mRNA_2165 0.18 -1.9
233,624 + 10533 mRNA_2165 0.36 -1.8
233,636 - 10533 mRNA_2165 0.38 -0.8
233,667 - 10533 mRNA_2165 0.44 -2.3
233,686 - 10533 mRNA_2165 0.47 -2.5
233,691 + 10533 mRNA_2165 0.48 -0.9
233,731 + 10533 mRNA_2165 0.55 -1.8
233,793 - 10533 mRNA_2165 0.67 -0.1
233,803 + 10533 mRNA_2165 0.69 1.1
234,097 + 0.4
234,099 - -0.4
234,115 + 2.9
234,188 - 1.2