Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2088

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2087: 10455 - K19792 FET4 low-affinity ferrous iron transport protein, at 41484 to 43178 10455 mRNA_2088: 10456 - K11539 CBR4 carbonyl reductase 4, at 43873 to 45155 10456 mRNA_2089: 10457 - KOG0637 Sucrose transporter and related proteins, at 45367 to 47923 10457

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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43,191 + -1.6
43,353 - -1.4
43,451 - -1.3
43,484 - 0.7
43,487 - -0.7
43,489 + 0.9
43,494 + 0.3
43,498 + 0.2
43,566 - 0.2
43,590 - 0.6
43,602 - 0.8
43,639 - -0.7
43,744 - -1.2
43,752 + -0.9
43,770 + 0.1
43,770 + -2.1
43,770 + -1.6
43,787 + -1.9
43,796 + -0.4
43,898 - 0.1
43,916 - 1.0
43,941 + 0.6
44,014 - 10456 mRNA_2088 0.11 -0.6
44,320 - 10456 mRNA_2088 0.35 0.3
44,473 - 10456 mRNA_2088 0.47 0.9
44,507 + 10456 mRNA_2088 0.49 -0.2
44,802 + 10456 mRNA_2088 0.72 -0.0
44,818 - 10456 mRNA_2088 0.74 -1.2
44,901 - 10456 mRNA_2088 0.80 -1.0
44,914 - 10456 mRNA_2088 0.81 2.0
44,934 - 10456 mRNA_2088 0.83 -0.5
45,139 + -1.5
45,258 + 0.4
45,335 + 1.0
45,387 - 0.0
45,825 + 10457 mRNA_2089 0.18 -1.3
45,956 + 10457 mRNA_2089 0.23 0.1
46,101 - 10457 mRNA_2089 0.29 1.4