Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2084

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2083: 10451 - K06276 PDPK1 3-phosphoinositide dependent protein kinase-1, at 30266 to 34170 10451 mRNA_2084: 10452 - KOG0254 Predicted transporter (major facilitator superfamily), at 34690 to 37198 10452

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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33,816 + 1.4
33,833 + -0.1
33,961 + 0.8
33,964 - 0.6
33,973 + 1.2
34,091 - 2.3
34,118 + 1.2
34,215 - -0.5
34,266 - -1.0
34,369 + 0.0
34,692 - 2.4
34,980 + 10452 mRNA_2084 0.12 0.7
35,015 + 10452 mRNA_2084 0.13 0.2
35,019 - 10452 mRNA_2084 0.13 -0.9
35,150 + 10452 mRNA_2084 0.18 -1.9
35,258 - 10452 mRNA_2084 0.23 -0.3
35,390 - 10452 mRNA_2084 0.28 1.3
35,754 + 10452 mRNA_2084 0.42 0.5
35,973 - 10452 mRNA_2084 0.51 -0.5
35,991 + 10452 mRNA_2084 0.52 -1.2
35,991 + 10452 mRNA_2084 0.52 -1.0
36,011 - 10452 mRNA_2084 0.53 1.3
36,042 + 10452 mRNA_2084 0.54 -2.1
36,149 + 10452 mRNA_2084 0.58 -2.4
36,182 + 10452 mRNA_2084 0.59 -0.2
36,326 + 10452 mRNA_2084 0.65 0.9
36,373 + 10452 mRNA_2084 0.67 -0.2
36,410 + 10452 mRNA_2084 0.69 -0.1
36,456 - 10452 mRNA_2084 0.70 -0.7
36,559 + 10452 mRNA_2084 0.74 1.5
37,025 - 0.7
37,197 - -1.5
37,481 - 0.3
37,483 + -0.1
37,492 - 1.2
37,496 + 0.4
37,513 - 0.9
37,569 + 0.2
37,615 + -0.7
37,615 - -1.8
37,631 + -0.2
37,635 - -1.6
37,638 + -0.7
37,639 + 0.5
37,640 - -0.3
37,644 + 0.3
37,830 - -1.1
37,837 + -1.2
37,846 + 0.1
37,923 + 0.4
37,940 + -0.7
37,940 - 0.8
38,103 - 0.1