Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2083

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2083: 10451 - K06276 PDPK1 3-phosphoinositide dependent protein kinase-1, at 30266 to 34170 10451 mRNA_2084: 10452 - KOG0254 Predicted transporter (major facilitator superfamily), at 34690 to 37198 10452

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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29,512 + 0.3
29,516 - 1.2
29,525 - -0.1
29,526 + 0.8
29,530 + 1.0
29,532 - 0.3
29,535 - 0.5
29,551 - 0.1
29,700 - -1.8
29,708 + 0.5
29,710 + 0.1
29,711 + 0.1
29,738 + -1.4
29,818 - 1.0
29,851 + 0.7
29,867 + 0.4
29,886 - -0.5
30,572 - 1.0
30,587 + 2.0
30,772 - 10451 mRNA_2083 0.13 1.3
30,868 + 10451 mRNA_2083 0.15 1.1
31,268 - 10451 mRNA_2083 0.26 0.0
31,318 + 10451 mRNA_2083 0.27 0.5
31,349 - 10451 mRNA_2083 0.28 1.2
31,414 - 10451 mRNA_2083 0.29 1.4
33,036 + 10451 mRNA_2083 0.71 1.2
33,217 + 10451 mRNA_2083 0.76 1.0
33,221 + 10451 mRNA_2083 0.76 -1.7
33,509 - 10451 mRNA_2083 0.83 3.2
33,577 - 10451 mRNA_2083 0.85 3.4
33,630 + 10451 mRNA_2083 0.86 -0.2
33,816 + 1.4
33,833 + -0.1
33,961 + 0.8
33,964 - 0.6
33,973 + 1.2
34,091 - 2.3
34,118 + 1.2
34,215 - -0.5
34,266 - -1.0
34,369 + 0.0
34,692 - 2.4
34,980 + 10452 mRNA_2084 0.12 0.7
35,015 + 10452 mRNA_2084 0.13 0.2
35,019 - 10452 mRNA_2084 0.13 -0.9
35,150 + 10452 mRNA_2084 0.18 -1.9