Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2075

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2075: 10443 - ProSiteProfiles-VWFA domain profile.-PS50234,SUPERFAMILY--SSF53300, at 13225 to 14495 10443 mRNA_2076: 10444 - K15073 UFO1 ubiquitin ligase complex F-box protein UFO1, at 14987 to 18739 10444

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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12,269 - -0.4
12,274 + 0.6
12,274 - 0.1
12,281 - 0.1
12,287 + -0.7
12,292 + -0.1
12,420 + -1.9
12,431 + 1.5
12,581 - -2.2
13,131 - 0.1
13,274 + 3.4
13,274 - 2.4
13,584 - 10443 mRNA_2075 0.28 0.2
13,592 - 10443 mRNA_2075 0.29 0.2
13,613 + 10443 mRNA_2075 0.31 0.6
13,902 + 10443 mRNA_2075 0.53 -0.3
14,030 - 10443 mRNA_2075 0.63 0.3
14,320 - 10443 mRNA_2075 0.86 -2.5
14,332 + 10443 mRNA_2075 0.87 1.7
14,454 - 0.6
14,626 - 0.1
14,757 - 0.4
14,811 - 1.6
14,867 + 0.2
15,085 + 0.1
15,241 + 0.2
15,370 - 10444 mRNA_2076 0.10 -1.8
15,435 - 10444 mRNA_2076 0.12 -0.3