Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2065

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2064: 10432 - KOG3839 Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans, at 863719 to 865833 10432 mRNA_2065: 10433 - Hypothetical Protein, at 866238 to 867408 10433 mRNA_2066: 10434 - SUPERFAMILY--SSF52047, at 867605 to 868583 10434

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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865,284 + 10432 mRNA_2064 0.74 0.2
865,304 - 10432 mRNA_2064 0.75 0.2
865,360 + 10432 mRNA_2064 0.78 1.8
865,451 - 10432 mRNA_2064 0.82 -0.9
865,540 - 10432 mRNA_2064 0.86 -0.7
865,547 - 10432 mRNA_2064 0.86 0.6
865,563 + 10432 mRNA_2064 0.87 2.8
865,706 + 0.8
865,714 - -1.0
865,981 - 1.4
865,998 + 0.4
866,001 - 1.7
866,019 - 2.0
866,024 + 0.0
866,141 - -0.4
866,147 - 1.3
866,174 - -1.0
866,175 - -0.1
866,416 + 10433 mRNA_2065 0.15 1.1
866,426 + 10433 mRNA_2065 0.16 0.9
866,455 - 10433 mRNA_2065 0.19 1.2
866,456 + 10433 mRNA_2065 0.19 1.1
866,465 - 10433 mRNA_2065 0.19 2.8
866,465 - 10433 mRNA_2065 0.19 2.4
866,517 - 10433 mRNA_2065 0.24 2.0
866,697 - 10433 mRNA_2065 0.39 0.8
866,716 - 10433 mRNA_2065 0.41 1.2
866,868 - 10433 mRNA_2065 0.54 0.9
866,876 - 10433 mRNA_2065 0.54 -0.4
867,206 - 10433 mRNA_2065 0.83 -0.2
867,288 - 10433 mRNA_2065 0.90 0.8
867,319 - 1.2
867,385 + 1.4
867,431 - -1.5
867,466 - 1.0
867,479 - -0.1
867,486 + 0.4
867,486 + 0.1
867,488 - 0.2
867,574 - 1.5
867,583 - 2.2
867,596 - 1.0
867,619 + -0.3
867,639 - 0.5
867,944 - 10434 mRNA_2066 0.35 -2.0
867,948 + 10434 mRNA_2066 0.35 0.8
867,991 - 10434 mRNA_2066 0.39 -2.8
868,059 - 10434 mRNA_2066 0.46 -0.4
868,066 + 10434 mRNA_2066 0.47 1.7
868,214 + 10434 mRNA_2066 0.62 -0.5
868,253 - 10434 mRNA_2066 0.66 -0.5
868,298 - 10434 mRNA_2066 0.71 0.2
868,342 - 10434 mRNA_2066 0.75 0.3
868,390 - 10434 mRNA_2066 0.80 -1.8