Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2040

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2039: 10407 - KOG2895 Uncharacterized conserved protein, at 808552 to 810897 10407 mRNA_2040: 10408 - K11729 ACAD10 acyl-CoA dehydrogenase family member 10, at 811231 to 813728 10408

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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810,455 - 10407 mRNA_2039 0.81 -0.1
810,465 + 10407 mRNA_2039 0.82 1.9
810,509 - 10407 mRNA_2039 0.83 -0.5
810,735 - -0.6
810,817 + 1.0
811,068 + 0.5
811,081 + -0.4
811,081 + 1.3
811,084 - 0.3
811,116 - 0.1
811,117 - 0.9
811,138 - 0.7
811,140 + -0.5
811,140 - -1.4
811,225 - 0.5
811,247 + 1.3
811,269 + -2.3
811,547 - 10408 mRNA_2040 0.13 0.5
811,549 + 10408 mRNA_2040 0.13 -2.1
811,553 + 10408 mRNA_2040 0.13 -2.4
811,842 - 10408 mRNA_2040 0.24 -1.7
811,845 + 10408 mRNA_2040 0.25 -0.9
812,145 + 10408 mRNA_2040 0.37 -0.8
812,396 + 10408 mRNA_2040 0.47 -0.7
812,436 - 10408 mRNA_2040 0.48 -0.6
812,481 - 10408 mRNA_2040 0.50 -2.8
812,493 + 10408 mRNA_2040 0.51 -3.4
812,591 - 10408 mRNA_2040 0.54 -0.3
812,771 + 10408 mRNA_2040 0.62 -3.3
813,191 - 10408 mRNA_2040 0.78 -3.9
813,328 - 10408 mRNA_2040 0.84 -2.1
813,332 - 10408 mRNA_2040 0.84 -3.4
813,491 + -2.7
813,507 + -2.4
813,642 - -1.9
813,792 - 0.3
813,803 + 0.5
813,819 + -0.8
813,823 - -0.7
813,824 - 0.5
813,827 + 0.9
813,829 - 0.1
813,829 - 0.8
813,833 + -0.6
813,835 - -0.5
814,314 + -0.6