Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2039

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2038: 10406 - Hypothetical Protein, at 807338 to 808315 10406 mRNA_2039: 10407 - KOG2895 Uncharacterized conserved protein, at 808552 to 810897 10407 mRNA_2040: 10408 - K11729 ACAD10 acyl-CoA dehydrogenase family member 10, at 811231 to 813728 10408

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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807,559 - 10406 mRNA_2038 0.23 -0.5
807,687 + 10406 mRNA_2038 0.36 -0.4
808,295 + -1.5
808,329 + -2.3
808,335 - 0.1
808,900 + 10407 mRNA_2039 0.15 0.5
809,927 + 10407 mRNA_2039 0.59 -0.4
810,455 - 10407 mRNA_2039 0.81 -0.1
810,465 + 10407 mRNA_2039 0.82 1.9
810,509 - 10407 mRNA_2039 0.83 -0.5
810,735 - -0.6
810,817 + 1.0
811,068 + 0.5
811,081 + -0.4
811,081 + 1.3
811,084 - 0.3
811,116 - 0.1
811,117 - 0.9
811,138 - 0.7
811,140 + -0.5
811,140 - -1.4
811,225 - 0.5
811,247 + 1.3
811,269 + -2.3
811,547 - 10408 mRNA_2040 0.13 0.5
811,549 + 10408 mRNA_2040 0.13 -2.1
811,553 + 10408 mRNA_2040 0.13 -2.4
811,842 - 10408 mRNA_2040 0.24 -1.7
811,845 + 10408 mRNA_2040 0.25 -0.9