Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2014

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2013: 10381 - SUPERFAMILY--SSF49899, at 743258 to 744708 10381 mRNA_2014: 10382 - K20697 GNBP1 gram-negative bacteria-binding protein 1, at 745416 to 747550 10382 mRNA_2015: 10383 - Hypothetical Protein, at 747541 to 748131 10383 mRNA_2016: 10384 - HMMPfam-Glycosyl transferase family group 2-PF13632,SUPERFAMILY--SSF53448, at 748205 to 751738 10384

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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744,550 + 10381 mRNA_2013 0.89 -0.2
744,643 - -0.4
744,702 - -0.2
744,798 + -0.0
744,846 + -0.0
744,853 + 2.5
744,858 + 0.1
744,858 + -0.2
744,868 - 1.2
744,871 + 0.3
744,877 - 1.1
744,879 + 0.8
744,879 - 0.4
744,880 - 0.7
744,880 - 1.2
744,882 - 0.0
744,882 - 0.5
744,882 - -1.0
744,883 - 0.9
744,884 + -1.4
744,885 + -0.1
744,885 + 0.9
744,885 - 0.5
744,886 + 1.3
744,895 + -0.3
744,895 + 2.0
744,898 + 0.1
744,898 + 0.1
744,900 - -1.2
744,906 + -2.5
744,917 + 1.6
744,927 + 0.9
744,938 + -0.7
744,964 + 0.4
744,984 - -1.0
744,990 - 0.7
745,003 + 0.5
745,011 - -2.4
745,013 - -2.2
745,014 - -0.8
745,017 - 0.9
745,020 + -0.9
745,021 - -1.2
745,022 - 0.6
745,053 - 0.2
745,068 - -0.5
745,072 - 0.0
745,099 - -0.3
745,119 - 0.2
745,120 - 0.6
745,126 + 0.1
745,127 - 0.9
745,134 + 1.0
745,137 + -0.1
745,187 - -1.2
745,265 - -0.6
745,268 + -0.4
745,274 + -1.2
745,276 + 0.2
745,305 + 0.5
745,309 - 0.1
745,502 + -0.0
745,732 - 10382 mRNA_2014 0.15 0.8
745,758 - 10382 mRNA_2014 0.16 0.7
745,780 + 10382 mRNA_2014 0.17 0.6
746,195 + 10382 mRNA_2014 0.36 0.1
746,335 - 10382 mRNA_2014 0.43 -0.0
746,734 + 10382 mRNA_2014 0.62 0.3
746,896 - 10382 mRNA_2014 0.69 -0.9
746,899 + 10382 mRNA_2014 0.69 -0.6
747,050 + 10382 mRNA_2014 0.77 0.3
747,090 + 10382 mRNA_2014 0.78 1.5
747,213 + 10382 mRNA_2014 0.84 -0.1
747,479 - 0.4
747,490 + 0.2
747,494 - 0.2
747,496 - 0.4
747,500 + 0.3
747,501 + 0.5
747,505 + 0.3
747,628 + 10383 mRNA_2015 0.15 0.3
747,639 - 10383 mRNA_2015 0.17 -0.1
747,641 + 10383 mRNA_2015 0.17 -0.1
747,643 + 10383 mRNA_2015 0.17 -0.6
747,651 - 10383 mRNA_2015 0.19 -0.4
747,653 + 10383 mRNA_2015 0.19 1.0
747,655 - 10383 mRNA_2015 0.19 2.1
747,667 - 10383 mRNA_2015 0.21 -0.0
747,673 + 10383 mRNA_2015 0.22 0.8
747,673 + 10383 mRNA_2015 0.22 0.0
747,674 - 10383 mRNA_2015 0.23 -0.1
747,679 - 10383 mRNA_2015 0.23 -0.1
747,684 + 10383 mRNA_2015 0.24 -0.0
747,689 + 10383 mRNA_2015 0.25 -0.7
747,704 - 10383 mRNA_2015 0.28 -0.2
747,717 + 10383 mRNA_2015 0.30 0.0
747,738 + 10383 mRNA_2015 0.33 0.1
747,741 + 10383 mRNA_2015 0.34 0.7
747,743 + 10383 mRNA_2015 0.34 1.1
747,748 - 10383 mRNA_2015 0.35 1.0
747,751 + 10383 mRNA_2015 0.36 -0.8
747,754 - 10383 mRNA_2015 0.36 0.3
747,756 - 10383 mRNA_2015 0.36 1.7
747,759 - 10383 mRNA_2015 0.37 -1.0
747,760 - 10383 mRNA_2015 0.37 1.7
747,774 - 10383 mRNA_2015 0.39 -3.4
747,786 - 10383 mRNA_2015 0.41 1.0
747,786 - 10383 mRNA_2015 0.41 -0.5
747,796 - 10383 mRNA_2015 0.43 0.2
747,803 - 10383 mRNA_2015 0.44 -0.0
747,807 + 10383 mRNA_2015 0.45 -1.6
747,809 - 10383 mRNA_2015 0.45 -0.2
747,813 + 10383 mRNA_2015 0.46 -1.1
747,821 + 10383 mRNA_2015 0.47 -0.4
747,828 - 10383 mRNA_2015 0.49 0.8
747,831 + 10383 mRNA_2015 0.49 1.3
747,840 + 10383 mRNA_2015 0.51 1.6
747,848 - 10383 mRNA_2015 0.52 0.2
747,855 - 10383 mRNA_2015 0.53 -1.2
747,857 + 10383 mRNA_2015 0.53 1.0
747,859 + 10383 mRNA_2015 0.54 -0.7
747,895 - 10383 mRNA_2015 0.60 -0.0
747,927 - 10383 mRNA_2015 0.65 0.1
747,960 - 10383 mRNA_2015 0.71 0.6
747,985 - 10383 mRNA_2015 0.75 -3.5
748,012 + 10383 mRNA_2015 0.80 -0.8
748,034 + 10383 mRNA_2015 0.83 0.2
748,283 - -0.5
748,307 + -0.1