Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2003

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2002: 10370 - HMMPfam-NAD(P)-binding Rossmann-like domain-PF13450,SUPERFAMILY--SSF51971, at 712088 to 714509 10370 mRNA_2003: 10371 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 714669 to 717655 10371 mRNA_2004: 10372 - Hypothetical Protein, at 718267 to 719987 10372

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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714,556 - 0.9
714,566 - -3.0
714,571 - 1.4
714,575 - -0.3
714,577 + 0.9
714,578 + -0.1
714,580 - 1.7
714,580 - -0.9
714,580 - 0.8
714,580 - 0.2
714,584 - 0.4
714,588 + 1.1
714,601 - -0.3
714,602 + -0.3
714,607 + -0.0
714,643 + 0.5
714,644 + 0.9
714,645 + 0.8
714,649 - 1.8
714,662 + -1.3
714,664 - -0.3
714,671 - -1.6
714,679 - 0.5
714,770 + 1.1
714,776 - 0.8
714,795 + -2.4
715,485 + 10371 mRNA_2003 0.27 1.5
715,510 + 10371 mRNA_2003 0.28 1.3
715,620 - 10371 mRNA_2003 0.32 2.8
715,635 - 10371 mRNA_2003 0.32 2.2
715,896 + 10371 mRNA_2003 0.41 1.1
715,925 - 10371 mRNA_2003 0.42 0.4
715,926 + 10371 mRNA_2003 0.42 0.0
715,929 + 10371 mRNA_2003 0.42 0.3
716,215 + 10371 mRNA_2003 0.52 1.9
716,645 - 10371 mRNA_2003 0.66 2.0
717,067 - 10371 mRNA_2003 0.80 1.2
717,224 - 10371 mRNA_2003 0.86 3.5
717,361 - 0.9
717,806 - 1.5
717,947 - 0.8
717,962 + 2.8
717,971 + 1.2
718,113 - 0.4
718,130 + 0.8
718,424 + 1.2