Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2000

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1999: 10367 - Hypothetical Protein, at 706788 to 707404 10367 mRNA_2000: 10368 - K09650 PARL, PSARL, PCP1 rhomboid-like protein, at 707641 to 708923 10368 mRNA_2001: 10369 - Hypothetical Protein, at 709037 to 710403 10369

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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706,849 + 0.2
706,897 + 10367 mRNA_1999 0.18 -0.5
706,914 + 10367 mRNA_1999 0.20 0.8
706,916 + 10367 mRNA_1999 0.21 1.6
707,071 + 10367 mRNA_1999 0.46 0.3
707,347 + 0.8
707,572 + 1.2
707,645 + -1.5
707,941 + 10368 mRNA_2000 0.23 -0.0
708,062 - 10368 mRNA_2000 0.33 1.0
708,079 - 10368 mRNA_2000 0.34 -1.1
708,213 + 10368 mRNA_2000 0.45 -1.8
708,247 + 10368 mRNA_2000 0.47 1.4
708,508 + 10368 mRNA_2000 0.68 0.5
708,514 + 10368 mRNA_2000 0.68 1.2
708,615 - 10368 mRNA_2000 0.76 0.8
708,638 + 10368 mRNA_2000 0.78 1.0
708,650 - 10368 mRNA_2000 0.79 -1.3
708,654 - 10368 mRNA_2000 0.79 -0.4
708,662 - 10368 mRNA_2000 0.80 0.7
708,812 + 2.9
708,828 + 1.2
708,830 + -0.2
708,947 - 0.5
708,968 + 0.7
708,984 + -0.5
709,074 - 1.4
709,098 + 1.9
709,113 - 1.4
709,115 + 1.4
709,117 - 1.3
709,123 - 1.4
709,394 - 10369 mRNA_2001 0.26 2.1