Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1991

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1990: 10358 - HMMPfam-PPR repeat-PF01535,HMMPfam-Pentatricopeptide repeat domain-PF13812,ProSiteProfiles-Pentatricopeptide (PPR) repeat profile.-PS51375,TIGRFAM-PPR pentatricopeptide repeat domain-TIGR00756, at 684324 to 686633 10358 mRNA_1991: 10359 - K03457 TC.NCS1 nucleobase-cation symporter-1, NCS1 family, at 687558 to 690393 10359 mRNA_1992: 10360 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 690779 to 693096 10360

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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686,704 - -1.8
686,833 + -0.0
686,844 + 1.3
686,848 + -0.2
686,882 + -0.1
686,909 - 1.4
686,992 + -0.3
686,992 - 1.0
687,019 - -0.8
687,043 - 0.3
687,047 + 1.1
687,052 + 0.6
687,057 + -2.9
687,063 + 0.3
687,064 - 0.8
687,065 + 1.6
687,119 + -0.5
687,122 + -0.6
687,129 - -1.0
687,129 - 0.9
687,132 - -1.9
687,136 + 0.8
687,138 + -1.1
687,146 - -0.0
687,146 - -2.0
687,166 + -5.2
687,173 + -1.1
687,201 + 0.8
687,348 - -0.5
687,349 + 0.2
687,483 + 0.1
687,658 - 0.8
687,750 - -0.6
687,924 - 10359 mRNA_1991 0.13 -0.5
688,217 + 10359 mRNA_1991 0.23 0.9
688,240 + 10359 mRNA_1991 0.24 1.3
688,375 + 10359 mRNA_1991 0.29 0.9
688,557 + 10359 mRNA_1991 0.35 1.2
688,666 - 10359 mRNA_1991 0.39 0.9
688,672 + 10359 mRNA_1991 0.39 0.5
688,685 - 10359 mRNA_1991 0.40 2.1
688,959 - 10359 mRNA_1991 0.49 2.0
689,164 - 10359 mRNA_1991 0.57 -2.3
689,270 + 10359 mRNA_1991 0.60 1.2
689,770 - 10359 mRNA_1991 0.78 1.0
690,693 + 1.4
690,715 + 1.0
691,023 - 10360 mRNA_1992 0.11 -0.3
691,255 - 10360 mRNA_1992 0.21 0.7