Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1946

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1945: 10313 - Hypothetical Protein, at 574351 to 575148 10313 mRNA_1946: 10314 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 575124 to 577080 10314 mRNA_1947: 10315 - K14864 FTSJ1, TRM7 tRNA (cytidine32/guanosine34-2'-O)-methyltransferase, at 577345 to 578684 10315

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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574,139 - 1.6
574,157 - -0.3
574,163 - -0.4
574,169 - -0.5
574,169 - 0.2
574,172 + -1.3
574,173 + -0.2
574,175 + -1.1
574,178 - 3.2
574,183 + 0.5
574,191 + 1.0
574,193 + -0.3
574,193 + -1.0
574,289 - -0.2
574,384 + -1.0
574,450 - 10313 mRNA_1945 0.12 2.2
574,459 + 10313 mRNA_1945 0.14 1.0
574,470 - 10313 mRNA_1945 0.15 -0.1
574,475 + 10313 mRNA_1945 0.16 2.9
574,510 + 10313 mRNA_1945 0.20 2.5
574,572 + 10313 mRNA_1945 0.28 1.9
574,764 - 10313 mRNA_1945 0.52 1.5
574,803 + 10313 mRNA_1945 0.57 3.0
575,060 - 10313 mRNA_1945 0.89 1.4
575,323 - 10314 mRNA_1946 0.10 2.1
575,481 + 10314 mRNA_1946 0.18 2.3
575,652 - 10314 mRNA_1946 0.27 1.8
575,652 + 10314 mRNA_1946 0.27 1.0
576,687 + 10314 mRNA_1946 0.80 1.6
576,826 - 10314 mRNA_1946 0.87 2.9
576,969 + 1.7
576,995 + 3.5
577,010 + 1.1
577,038 - 1.7
577,122 - 0.5
577,176 + 0.4
577,437 + -0.2
577,444 + 1.8
577,548 - 10315 mRNA_1947 0.15 1.2
577,836 - 10315 mRNA_1947 0.37 -0.4
577,838 + 10315 mRNA_1947 0.37 1.8
577,851 - 10315 mRNA_1947 0.38 -0.5
577,987 - 10315 mRNA_1947 0.48 -0.6