Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1940

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1939: 10307 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 558580 to 560603 10307 mRNA_1940: 10308 - K00276 AOC3, AOC2, tynA primary-amine oxidase, at 561164 to 563777 10308 mRNA_1941: 10309 - KOG3798 Predicted Zn-dependent hydrolase (beta-lactamase superfamily), at 564207 to 567007 10309

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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560,181 + 10307 mRNA_1939 0.79 3.2
560,236 - 10307 mRNA_1939 0.82 -1.3
560,531 - -1.7
560,666 - -0.2
560,684 + 0.3
560,688 - 1.6
560,696 + 0.8
560,716 + 1.2
560,720 + -0.9
560,726 + -0.7
560,727 - 0.8
560,747 - -1.5
560,756 - 0.5
560,781 + -0.1
560,798 - 0.8
560,817 + -0.5
560,826 + 0.9
560,827 - -0.6
560,836 - -0.1
560,840 + -0.3
560,850 + 0.6
560,852 - 0.6
560,864 + 0.5
560,864 - -1.3
560,986 - 1.3
560,990 - 0.1
560,991 + -0.4
560,996 - 1.0
560,997 - 0.2
561,002 + -1.7
561,002 - 0.4
561,009 + 1.4
561,011 + 0.0
561,011 + 0.2
561,014 - 1.3
561,024 - 0.8
561,026 + -1.3
561,030 + 2.7
561,031 + 0.1
561,034 + 0.4
561,059 + -0.0
561,059 - 0.5
561,065 + 0.2
561,067 - -1.2
561,068 + -0.7
561,075 - -0.8
561,076 + 0.8
561,077 + -4.2
561,081 - -0.9
561,083 + 1.3
561,089 - 0.3
561,091 + 0.1
561,093 + 0.6
561,093 + 0.5
561,095 - 0.2
561,098 + -0.3
561,104 + 0.6
561,104 + -0.5
561,106 + 0.3
561,208 + -1.0
561,227 - 1.3
561,232 + 0.3
561,243 - 0.2
561,244 + -0.4
561,339 + -0.1
561,519 - 10308 mRNA_1940 0.14 -0.5
561,592 - 10308 mRNA_1940 0.16 0.3
561,681 - 10308 mRNA_1940 0.20 -1.1
561,684 + 10308 mRNA_1940 0.20 -0.8
562,384 + 10308 mRNA_1940 0.47 1.6
562,417 - 10308 mRNA_1940 0.48 0.8
562,543 - 10308 mRNA_1940 0.53 -0.7
562,568 + 10308 mRNA_1940 0.54 0.3
562,657 + 10308 mRNA_1940 0.57 0.4
562,687 - 10308 mRNA_1940 0.58 -0.0
562,856 + 10308 mRNA_1940 0.65 -0.5
563,001 - 10308 mRNA_1940 0.70 1.1
563,014 - 10308 mRNA_1940 0.71 0.4
563,280 - 10308 mRNA_1940 0.81 0.8
563,293 + 10308 mRNA_1940 0.81 1.4
563,561 - -0.7
563,640 + 0.3
563,755 + 0.1
563,848 - -0.1
563,870 + 0.6
563,886 + 0.4
563,888 - -0.8
563,897 + -0.9
563,905 + -0.0
563,905 - 0.5
563,909 - -1.9
563,909 + 0.4
563,915 - -0.5
564,040 - 0.8
564,043 + -0.4
564,048 - 0.4
564,070 + -0.7
564,205 + -0.3
564,206 - 2.0
564,372 + -1.2
564,375 + -0.4