Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1937

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1936: 10304 - K07424 CYP3A cytochrome P450, family 3, subfamily A, at 551220 to 553834 10304 mRNA_1937: 10305 - K18342 OTUD6 OTU domain-containing protein 6, at 554394 to 556031 10305 mRNA_1938: 10306 - HMMPfam-Amidohydrolase family-PF07969,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 556583 to 558262 10306

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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553,466 + 10304 mRNA_1936 0.86 0.1
553,727 - -1.2
553,734 - 0.4
553,865 + -1.1
553,868 + 2.3
553,890 - 1.7
553,893 + -0.7
553,903 + 0.7
553,909 - 0.1
553,916 + -0.5
553,945 - -0.6
553,981 - 1.5
554,011 + 0.4
554,025 + 0.6
554,029 - 0.0
554,038 - 1.5
554,040 + -2.1
554,040 + 1.0
554,046 + -2.2
554,064 + 1.1
554,069 + 2.2
554,074 + -1.8
554,084 + -0.7
554,096 + 0.1
554,105 + -0.8
554,147 - 0.4
554,147 - -0.6
554,149 - -0.3
554,165 - -0.5
554,165 - -0.6
554,165 + -0.7
554,174 - -0.4
554,185 + 0.2
554,326 - 0.8
554,334 - 0.3
554,336 + 0.4
554,349 + 0.1
554,350 + 0.4
554,361 + 2.0
554,367 + -2.3
554,470 + -0.4
554,816 - 10305 mRNA_1937 0.26 -2.0
555,084 - 10305 mRNA_1937 0.42 -1.7
556,233 + -0.2
556,233 - 0.0
556,259 - -1.3
556,395 - 0.4
556,401 - 2.5
556,431 + -0.2
556,535 + 1.2
556,538 + -1.1
556,546 + -1.0
556,691 - -0.2
556,879 - 10306 mRNA_1938 0.18 0.4
556,948 + 10306 mRNA_1938 0.22 0.2
556,995 + 10306 mRNA_1938 0.25 1.5