Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1911

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1910: 10278 - HMMPfam-Domain of unknown function (DUF2427)-PF10348,HMMPfam-Protein of unknown function (Ytp1)-PF10355, at 495564 to 497825 10278 mRNA_1911: 10279 - K14967 BRE2, CPS60 COMPASS component BRE2, at 497993 to 499871 10279 mRNA_1912: 10280 - K04450 ATF2, CREBP1 cyclic AMP-dependent transcription factor ATF-2, at 500203 to 502614 10280

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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497,026 - 10278 mRNA_1910 0.65 -1.7
497,045 - 10278 mRNA_1910 0.65 0.1
497,612 + -0.6
497,615 + 0.2
497,903 - -0.0
497,906 + 2.0
497,915 - -0.7
497,916 + 3.6
497,932 + -1.6
497,934 + 0.2
498,067 + 2.5
498,072 - 2.0
498,512 + 10279 mRNA_1911 0.28 1.3
499,112 + 10279 mRNA_1911 0.60 2.0
499,125 + 10279 mRNA_1911 0.60 2.6
499,291 + 10279 mRNA_1911 0.69 1.6
499,407 - 10279 mRNA_1911 0.75 1.8
499,546 - 10279 mRNA_1911 0.83 2.1
499,684 - 1.7
499,692 - 0.3
499,857 + -1.3
499,859 + -1.6
500,024 + -0.0
500,154 - 1.1
500,305 - 1.3
500,439 + 2.5