Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1910

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1909: 10277 - K01426 E3.5.1.4, amiE amidase, at 493180 to 495383 10277 mRNA_1910: 10278 - HMMPfam-Domain of unknown function (DUF2427)-PF10348,HMMPfam-Protein of unknown function (Ytp1)-PF10355, at 495564 to 497825 10278 mRNA_1911: 10279 - K14967 BRE2, CPS60 COMPASS component BRE2, at 497993 to 499871 10279

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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494,695 - 10277 mRNA_1909 0.69 0.4
495,117 - 10277 mRNA_1909 0.88 -0.1
495,133 + 10277 mRNA_1909 0.89 0.2
495,135 + 10277 mRNA_1909 0.89 0.9
495,150 - 10277 mRNA_1909 0.89 -0.6
495,264 - -0.1
495,266 - 1.1
495,277 + -0.6
495,286 + -0.2
495,292 - -1.1
495,328 - 0.0
495,408 + 1.2
495,440 + 0.6
495,465 + 0.1
495,752 - 1.1
495,916 - 10278 mRNA_1910 0.16 -1.3
496,028 + 10278 mRNA_1910 0.21 0.4
496,165 + 10278 mRNA_1910 0.27 -0.3
496,297 + 10278 mRNA_1910 0.32 -0.3
496,327 + 10278 mRNA_1910 0.34 -0.0
496,604 - 10278 mRNA_1910 0.46 0.6
496,874 - 10278 mRNA_1910 0.58 -0.1
496,921 - 10278 mRNA_1910 0.60 -4.0
497,026 - 10278 mRNA_1910 0.65 -1.7
497,045 - 10278 mRNA_1910 0.65 0.1
497,612 + -0.6
497,615 + 0.2
497,903 - -0.0
497,906 + 2.0
497,915 - -0.7
497,916 + 3.6
497,932 + -1.6
497,934 + 0.2
498,067 + 2.5
498,072 - 2.0
498,512 + 10279 mRNA_1911 0.28 1.3