Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1909

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1908: 10276 - K01426 E3.5.1.4, amiE amidase, at 490535 to 492598 10276 mRNA_1909: 10277 - K01426 E3.5.1.4, amiE amidase, at 493180 to 495383 10277 mRNA_1910: 10278 - HMMPfam-Domain of unknown function (DUF2427)-PF10348,HMMPfam-Protein of unknown function (Ytp1)-PF10355, at 495564 to 497825 10278

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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492,198 + 10276 mRNA_1908 0.81 0.4
492,381 + 10276 mRNA_1908 0.89 0.9
492,681 - -0.9
492,934 + 0.5
493,073 - 0.8
493,219 + 2.0
493,266 + -0.1
493,390 + -0.6
493,540 + 10277 mRNA_1909 0.16 -1.2
493,971 + 10277 mRNA_1909 0.36 -1.3
494,065 + 10277 mRNA_1909 0.40 0.1
494,100 + 10277 mRNA_1909 0.42 -0.2
494,112 + 10277 mRNA_1909 0.42 -0.9
494,249 + 10277 mRNA_1909 0.49 0.1
494,520 + 10277 mRNA_1909 0.61 1.6
494,695 - 10277 mRNA_1909 0.69 0.4
495,117 - 10277 mRNA_1909 0.88 -0.1
495,133 + 10277 mRNA_1909 0.89 0.2
495,135 + 10277 mRNA_1909 0.89 0.9
495,150 - 10277 mRNA_1909 0.89 -0.6
495,264 - -0.1
495,266 - 1.1
495,277 + -0.6
495,286 + -0.2
495,292 - -1.1
495,328 - 0.0
495,408 + 1.2
495,440 + 0.6
495,465 + 0.1
495,752 - 1.1
495,916 - 10278 mRNA_1910 0.16 -1.3
496,028 + 10278 mRNA_1910 0.21 0.4
496,165 + 10278 mRNA_1910 0.27 -0.3
496,297 + 10278 mRNA_1910 0.32 -0.3
496,327 + 10278 mRNA_1910 0.34 -0.0